Ok, this is 2.10.1.rc4. We fixed various blockers and critical bugs and also did a crapectomy for a bunch of spkgs. It is expected that the doctest for fast_eval.pyx will still fail on some platforms since we haven't fixed that issue yet. Another issue are the Maple doctests with older Maple releases, i.e. Maple 9.5.
It is expected that we will finally release 2.10.1 this Friday. Note that we closed 173 tickets so far and will only merge reviewed tickets which fix a critical or worst issues. All other patches will have another chance for 2.10.2. The only spkg issue open is ATLAS, which I am working on right now and should be ready for testing in about twelve hours. The tarball [203MB] is available at the usual place: http://sage.math.washington.edu/home/mabshoff/release-cycles-2.10.1/sage-2.10.1.rc4.tar Cheers, Michael ################################################################### To Do: * reviews for ticket with spkg/patches/bundles * disable mandatory FLINT check * update documentation for new ATLAS options * #1689: update documentation for new SAGE_FORTRAN_LIB * #1884: leak in coercion [problematic, probably bumped to 2.10.2 due to segfaults triggered by #1337] * #1874: PolyBoRi leak: fix it or get somebody else to do it * remove opencdk since it is included in gnutls 2.2.1 [2.10.2?] * add two open valgrind issues to track: Valgrind issues in 2.9.2 sage-memcheck.3056: Conditional jump or move depends on uninitialised value(s), Invalid read of size 1 doctest calculus.py sage-memcheck.19097: doctest: real_rqdf.py sage-memcheck.24275: longest_match - libz: Conditional jump or move depends on uninitialised value(s) ################################################################### spkg audit: * ensure that "make install" is non-parallel, i.e. do a "export MAKE=make" * SAGE_LOCAL check (#633) * add spkg-check (#299) * add proper SPKG.txt to all packages * /usr/bin/env bash (#1638) * add md5sums for spkgs (#329) * check for SAGE_DEBUG mode, i.e CFLAGS="-O0 -g" (#475) * Debian build support ################################################################### Bugfixes that need to be pushed upstream: * gsl_isinf: Bug on OSX where the system's isinf always returns "1" * libfplll Solaris build fixes * GNUTLS Cygwin build fixes * rubiks.spkg: dik solver has cc -> $(CC) fix * python_gnutls fix for OSX and other gnutls versions ################################################################### Must be merged/resolved before Sage-2.10.1.final: #1495: Terminate ATLAS build on Linux when power management is enabled #1547: Add pre-tuned settings for ATLAS for certain CPUs #1641: Make ATLAS restart build on tolerance error #1767: Add SAGE_ATLAS_LIB, SAGE_ATLAS_TARGZ flags to allow use of external atlas #1886: add atlas pretuning for AMD Athlon MP processors Reopened: #1209: Mike Hansen: make it so maple.gcd?? shows source code [later reopened due to more review] To Review/merge que: Merged in rc4: #1926: Burcin Erocal: fixes for the maple interface [this is another patch to fix some more doctest issues] #1960: Martin Albrecht: bug when reducing Gröbner basis #1967: William Stein: fix matplotlib local-related bugs once and for all #1968: William Stein: notebook -- remove capability of using live tutorial for users not signed in to the notebook server #1973: Jason Grout, Mike Hansen: native partition_associated function #1983: William Stein: change 0^0, for 0 a Sage integer, to evaluate to 1 for consistency with Python, PARI, Magma, Maple, MPFR, GMP, etc. #1985: Steve Vonn, Michael Abshoff: is_pseudoprime docstring doesn't wrap #1988: Craig Citro: doctest fallout -- osx ppc 10.4 overflow error #1989: Craig Citro: doctest fallout -- osx ppc 10.4 matrix index out of range #1996: Craig Citro: doctest failure on 2.10.1.rc3: libecm.pyx #2002: Jason Grout: creating a fresh new notebook in sage-2.10.1.rc3 is broken #2005: William Stein: The .sage directory -- adjust permissions #2006: Michael Abshoff: crap -- gap contains a binary #2008: Michael Abshoff: crap -- cython contains a stupid OSX file #2009: Michael Abshoff: crap -- networkx spkg in sage-2.10.1.rc3 contains a bunch of .svn directories #2010: Michael Abshoff: crap -- libpng contains lots and lots of weird (OS X?) temp or meta files #2011: Michael Abshoff: crap -- mpfi ships with two precompiled binaries #2012: Michael Abshoff: crap -- jmol contains some os x files that shouldn't be there #2013: Michael Abshoff: crap -- f2c spkg contains precompiled binary #2014: Michael Abshoff: crap -- matplotlib contains an annoying OS X temp file #2015: Michael Abshoff: crap -- twisted contains a bunch of ._ osx crap #2016: Michael Abshoff: crap -- there is a precompiled object file in the SAGE_ROOT/examples directory #2018: Michael Abshoff: crap -- scipy sandbox has a bunch of .svn directories #2022: William Stein: bug with load and loads when data is not compressed during save Merged in rc3: #740: John Cremona: Implement standard transformations for elliptic curves & points #1328: Michael Abshoff: 2.8.14/Solaris: partitions_c.h compile fix #1329: Michael Abshoff: 2.8.14/Solaris: real_rqdf.pyx compile fixes #1554: Mike Hansen: issues with calling symbolic expressions #1637: Michael Abshoff: Update to mpfr 2.3.1 - fix small issues in the spkg #1887: Robert Miller: graph isomorphism for multiple edges #1923: Jason Grout: Make an obvious checkbox or menu to switch on pretty printing in the notebook #1938: Robert Bradshaw: Fast (double) function evaluation for plotting, etc. #1958: Craig Citro: fix problems with ANSI codes in sage0.py #1966: Josh Kantor: inline_fortran broke on OSX #1970: Willaim Stein, Martin Albrecht: gnutls should not be needed if you're running the notebook insecurely, so don't require it #1972: William Stein: programming guide -- fix a confusing typo #1978: Yi Qiang, Michael Abshoff: update python-gnutls #1979: John, Cremona, Michael Abshoff: doctest fall out from #740 in tut.tex Merged in rc2: #571: John Cremona, Denis Simone, William Stein: weird doctest failure in simon_two_descent [to quote William: "John and Denis Simone in fact did greatly update this code and it is now in Sage. And this particularly doctest runs almost instantly now, so remove #long"] #1058: John Cremona, William Stein: the mwrank interface barfs on bad input #1649: John Cremona, William Stein, Michael Abshoff: Updated eclib.spkg to eclib-20080127.spkg #1650: John Cremona: eclib.spkg: fix tsat test failure #1823: Robert Bradshaw, Carl Witty: RDF/CDF coverage, consistent hashing #1922: Jason Grout: change and update lprint #1940: Martin Albrecht: Segmentation fault when comparing two empty ideals #1953: Carl Witty: fix problems in calculus.py found by Jason while reviewing #1945 #1954: Mike Hansen: sage/modules/free_module_element.pyx computing abs(vector(...)) #1957: Michael Abshoff: Solaris 9 fixes for libfplll.spkg #1959: Michael Abshoff: Solaris 9 fixes for rubiks.spkg Merged in rc1: #384: Alex Ghitza, Mike Hansen: latex formatting issues with symbolic expressions #652: Nick Alexander: .sage files destroy existing .py files #743: Robert Miller, Carl Witty: graphs: simplify interface for accessing vertex objects #980: Martin Albrecht, Didier Deshommes: random_element() for multivariate polynomials #1083: Craig Citro: Bug in degree 1 number fields; manifests itself in element.matrix(), .trace(), .norm(), etc #1155: Mike Hansen: PermutationGroup coercion bug #1209: Mike Hansen: make it so maple.gcd?? shows source code [later reopened due to more review] #1456: Mike Hansen: gaussian_binomial bug #1575: Jason Grout: plotting -- fix vector plotting #1845: Josh Kantor, Carl Witty: list_plot3d should be able to accept lists of points in arbitrary positions #1875: William Stein: increase idle timeout and save interval on the notebook to 6 minutes (shorter times cause serious performance problems, esp on large notebook servers) #1929: Alex Ghitza: add more examples to qqbar.py #1943: Michael Abshoff: rpy fails to build on OSX 10.4 #1945: Carl Witty: improve reference manual formatting Merged in rc0: #1600: Craig Citro: another weird coercion bug #1911: William Stein, Craig Citro: elliptic curves -- make heegner_index command return index instead of square of index; clarify why sometimes results is not an integer (it's not a bug, it's part of the algorithm) #1930: Michael Abshoff: R is broken for parallel make, rpy is broken for fresh installs, remove recommended tar.gzs #1931: Michael Abshoff: sage.spkg need to depend on ecm.spkg #1933: Michael Abshoff: libgpg_error-1.6.spkg broken make install for parallel make #1934: Michael Abshoff: sage-check for ATLAS broken on OSX #1935: Craig Citro: legendre_symbol currently quite slow #1937: Martin Albrecht: fix LLL documentation #1939: Michael Abshoff: Fix OSX rpy import issues, i.e. DYLD_LIBRARY_PATH fix Merged in alpha2: #1028: Michael Abshoff: fix omega support for new valgrind release (3.3.0 once it is out) #1050: Michael Abshoff: update optional valgrind.spkg to 3.3.0 release #1147: William Stein: change location of valgrind output files to something less obnoxious #1550: Robert Miller: use libecm instead of pexpect+ecm binary #1593: Martin Albrecht: m4ri -- the documentation of the echelon command only lists 1 algorithm but >= 2 algorithms are supported #1617: William Stein: speed problem when factoring polynoms #1623: Michael Abshoff: update gsl to 1.10 #1724: Craig Citro: Creating ModularForms from q-expansions #1817: Martin Albrecht: crypto.mq.sr doctest coverage at 100% #1818: Martin Albrecht: include AES polynomial system generator in reference manual #1852: Michael Abshoff: Configure R to use Atlas, other build improvements to R package #1869: Robert Miller: Implement show(list(graphs(n))) #1873: Mike Hansen: elementary function expansion returns result in the wrong ring #1889: Martin Albecht: 2.10.1.alpha2 doctest failure in crypto/mq/sr.py #1890: Robert Miller: interfaces/libecm.pyx doctest failure #1894: Martin Albrecht: toy_buchberger failures #1895: Martin Albrecht: deal with passed through keyword arguments for Gröbner basis computation #1898: Michael Abshoff, William Stein: numerical doctest failure for polynomial_element.pyx on Linux/Itanium #1899: Robert Miller: Making graphs with a matrix and loops=True blows up #1900: Robert Miller, Jason Grout: Clean up adjacency matrix functions for graphs #1905: Alex Ghitza: both E.Lseries and E.L_series are defined. Just define one of them, say E.Lseries. #1906: Alex Ghitza: eisenstein_series_qexp does not pay attention to the field parameter #1913: Burcin Erocal: poles of gamma #1917: William Stein: get rid of crazy OS X charpoly workaround, since linbox isn't broken anymore #1924: Robert Bradshaw, William Stein, Clement Pernet: Optimize matrix multiply cache friendliness Merged in alpha1: #1166: William Stein: 2D terminal output is inconsistent and corrupted #1217: Willem Jan Palenstijn: libfplll error codes #1274: Martin Albrecht: modify singular interface to allow for verbose output #1294: Mike Hansen: v.n() function blows up when v is a vector #1306: Robert Miller: Bundles of graphs #1418: Joel Mohler: magma element __floordiv__ #1508: William Stein: axes_label in plot() broken #1577: Martin Albrecht: .coefficients() and .monomials() differ in order in multivariate polynomial rings #1583: Craig Citro: simple modules of modular symbols over finite fields #1604: William Stein: more locale problems with python exposed by matplotlib #1606: William Stein: plotting -- add aspect_ratio option to show command #1652: Mike Hansen: length of DAGs with loops calculation runs infinite #1704: David Harvey: replace _DivPolyContext by _multiply_point #1713: Martin Albrecht: fix SageElement._sage_ #1737: William Stein: ctl-c doesn't exit job in parametric_plot3d #1718: William Stein: bug in parametric_plot #1721: Josh Kantor, Michael Abshoff: Introduce SAGE_ATLAS_LIB to skip building of ATLAS #1787: Michael Abshoff: Apply row-major GEMM major ATLAS errata #1794: Willem Jan Palenstijn: Gram-Schmidt typo #1804: Nick Alexander: Factorization.__mul__ assumes that the primes in the factorization commute, which may not be a valid assumption #1812: Martin Albrecht: doctest coverage for finite_field_givaro up to 100% #1814: Martin Albrecht: doctstrings for stream_cipher.py #1820: Mike Hansen: update documentation for skew_partition.py #1829: Martin Albrecht: small improvements for term ordering module #1831: David Joyner: 3d docs: add more examples of parametric plots #1832: Mike Hansen: change how real(...) is defined in Sage #1833: William Stein: plot3d and parametric_plot3d can be very slow on some inputs #1835: Martin Albrecht: some minor changes to the documentation of basis_is_groebner #1836: Martin Albrecht: return reduced Groebner bases by default #1837: Martin Albrecht: pass through options from groebner_basis [hunk 2 seems to have snuck in] #1840: David Kohel: Hill cipher addition to crypto package #1843: William Stein: cputime for gp interface #1844: Craig Citro: Get doctest coverage in sage/modular/modform up to 100% #1854: David Joyner: add more 3d plots to the reference manual #1856: William Stein: 3d graphics -- bug in setting options via the show command #1858: William Stein: plot.py coverage is crap -- improve it #1872: William Stein: serious bug in pickling elliptic curves #1874: Robert Miller: implement bipartite graphs #1878: Paul Zimmermann: add new function from mpfr-2.3.0 #1880: Michael Abshoff: qqbar numerical doctest failure #1881: Michael Abshoff: tut.tex doctes failure with factorize() #1883: Michael Abshoff: Sage distribution includes Windows executables Merged in alpha0: #712: William Stein: SAGE/Maxima is sometimes unable to solve a linear system [solved by #1827 merged in 2.10] #827: Nick Alexander: nfrootsof1 from Pari #1391: Martin Albrecht, William Stein : bug in unit part of factorizations of multivariate polynomials #1485: David Joyner, Simon King: wrapper for invariant_ring and invariant_algebra_reynolds in Singular #1525: Robert Miller: NetworkX upgraded spkg, Bipartite graphs #1616: Mike Hansen, David Joyner: Change asin to arcsin, etc. #1622: Michael Abshoff: update gnutls to 2.2.1 #1627: Michael Abshoff: update libgcrypt to 1.4 #1630: Michael Abshoff: update opencdk to 0.6.6 #1653: David Harvey: Bug raising an integer to a float #1710: William Stein: switch default location of trac server away from http://www.sagemath.org:9002/ #1715: Martin Albrecht: PolyBoRi pickling/hashing #1746: Alex Ghitza: add p-norm as a method to vectors #1772: Mike Hansen, Robert Miller: bug somewhere in the symbolics #1789: William Stein: standalone Sage scripts don't work on Linux, they work fine on OS X #1800: Carl Witty: bug with RealIntervalField/MPFI #1801: Robert Bradshaw: Update cython package to 0.9.6.11 #1813: Martin Albrecht: misc enhancements for ref.pdf #1821: Michael Abshoff, Bill Hart: Update FLINT to 1.0.6 #1826: Robert Bradshaw, Robert Miller: cdefs.pxi and stdsage.pxi were missing some function declarations #1850: Robert Bradshaw: serious bug in parametric plotting of curves #1851: Robert Miller: add documentation, doctests for graphs/bruhat_sn.pyx #1853: Michael Abshoff: update libgpg_error to 1.6 #1855: William Stein: rivial but visibly very painful bug in plotting #1859: Robert Bradshaw: 3d and 2d graphics -- some unification ################################################################### Review Que (needs updating): #1014: there should be an Integer.number_of_digits() function #1099: graphs: consolidating delete functionality #1171: [with negative review]: _new() method for quadratic field elements #1186: [with negative review]: Charpoly of a matrix of polynomials sometimes breaks #1276: incorporate willem's doctest timing code into sage #1371: hg_sage.pull/push() to non-default server with multiple branches #1399: [with negative and positive review] Problems with arithmetic #1413: [with patch, with negative review] added _sig_on/_sig_off to mpolynomial_libsingular #1578: Make polynomial .diff() accept optional argument times for repeated differentiation. #1601: issue with noclobber and building sage #1651: bug in decode #1684: [with negative review]: Intelligent indentation when user presses "enter". #1714: allow keyword arguments for remote sage methods (sage0) #1722: Symbolic Matrices should be callable. #1761: Graphviz output for graphs #1766: enhancing latex embedding with plots #1793: Hilbert series, Hilbert polynomial, Laurent series expansion #1795: Adds support for cdef'd and cpdef'd functions to sage-coverage #1805: improve doctest coverage for structure/factorization.py #1810: refactoring to improve finite field reference manual #1816: rename MPolynomialRing.repr_long method to __str__ #1838: comma in latex lists need a trailing space #1839: sage-crap: incorporate this script into sage and start using it before each release. #1862: implement at least some sort of useful rudimentary implicit 2d plotting function #1886: add atlas pretuning for AMD Athlon MP processors #1908: Make it so that show plots a list as a grid #1923: Make an obvious checkbox or menu to switch on pretty printing in the notebook #1926: fixes for the maple interface #1946: Tate's algorithm has NO DOCTESTS! See sage/schemes/elliptic_curves/ell_number_field.py --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---
