I was too busy for the last couple of weeks to help seriously with this, but I did try to install it on my PPC apple laptop and my Intel OS X 10.4 desktop. It failed on both; the PPC problem is probably the same as you mentioned. I will post the errors from the intel machine when I get a chance.
I think its great that you guys started working on this; I think it would help Sage a lot if we can say there is support for R before we go to the joint meetings. -Marshall Hampton On Nov 26, 12:14 am, "William Stein" <[EMAIL PROTECTED]> wrote: > On Nov 25, 2007 10:07 PM, William Stein <[EMAIL PROTECTED]> wrote: > > > Mike Hansen and I have put some work into making it possible to very > > easily use R from Sage, and are > > even maybe considering including R in Sage. This is very likely > > definitely not ready yet, but we > > have an experimental package that might work. It would be very > > useful if some people could test > > building it and report back whether or not it works, and how long it > > takes to build. > > Responding to myself. R builds on ppc osx10.4 but rpy doesn't yet: > > gcc -bundle -undefined dynamic_lookup > build/temp.macosx-10.3-ppc-2.5/src/rpymodule2061.o > build/temp.macosx-10.3-ppc-2.5/src/R_eval2061.o build/temp.macos > x-10.3-ppc-2.5/src/io2061.o > -L/Users/was/sage-2.8.14.rc1/spkg/build/r-2.6.1rc.p1/src/bin > -L/Users/was/sage-2.8.14.rc1/spkg/build/r-2.6.1rc.p1/src/lib -L/ > Users/was/sage-2.8.14.rc1/local/lib/gcc-lib/powerpc-apple-darwin6.8/4.0.3/ > -L/Users/was/sage-2.8.14.rc1/spkg/build/r-2.6.1rc.p1/src/bin > -L/Users/was/sage > -2.8.14.rc1/spkg/build/r-2.6.1rc.p1/src/lib > -L/Users/was/sage-2.8.14.rc1/local/lib/gcc-lib/powerpc-apple-darwin6.8/4.0.3/ > -lR -lf95 -o build/lib.macosx-1 > 0.3-ppc-2.5/_rpy2061.so > /usr/bin/ld: warning can't open dynamic library: libRblas.dylib > referenced from: > /Users/was/sage-2.8.14.rc1/spkg/build/r-2.6.1rc.p1/src/lib/libR.dylib > (c > hecking for undefined symbols may be affected) (No such file or > directory, errno = 2) > /usr/bin/ld: Undefined symbols: > _dgemm_ referenced from libR expected to be defined in libRblas.dylib > _dsyrk_ referenced from libR expected to be defined in libRblas.dylib > _zgemm_ referenced from libR expected to be defined in libRblas.dylib > _dcopy_ referenced from libR expected to be defined in libRblas.dylib > _dtrsm_ referenced from libR expected to be defined in libRblas.dylib > _daxpy_ referenced from libR expected to be defined in libRblas.dylib > _dswap_ referenced from libR expected to be defined in libRblas.dylib > _ddot_ referenced from libR expected to be defined in libRblas.dylib > __g95_sign_r8 referenced from libR expected to be defined in libRblas.dylib > _dasum_ referenced from libR expected to be defined in libRblas.dylib > _dscal_ referenced from libR expected to be defined in libRblas.dylib > _dnrm2_ referenced from libR expected to be defined in libRblas.dylib > _drot_ referenced from libR expected to be defined in libRblas.dylib > _drotg_ referenced from libR expected to be defined in libRblas.dylib > collect2: ld returned 1 exit status > error: command 'gcc' failed with exit status 1 > > real 0m3.647s > user 0m1.476s > sys 0m0.957s > sage: An error occurred while installing rpy-1.0-rc3-p1 > Please email sage-develhttp://groups.google.com/group/sage-devel > explaining the problem and send the relevant part of > of /Users/was/sage-2.8.14.rc1/install.log. Describe your computer, > operating system, etc. > If you want to try to fix the problem, yourself *don't* just cd to > /Users/was/sage-2.8.14.rc1/spkg/build/rpy-1.0-rc3-p1 and type 'make'. > Instead type "/Users/was/sage-2.8.14.rc1/sage -sh" > in order to set all environment variables correctly, then cd to > /Users/was/sage-2.8.14.rc1/spkg/build/rpy-1.0-rc3-p1 > (When you are done debugging, you can type "exit" to leave the > subshell.) > > > > > > > All you have to do is: > > > (1) install R: > > > $ time ./sage -f -m r-2.6.1rc.p1 > > > NOTE: If the package name changes, type > > > $ ./sage -experimental |grep r- > > > to see what the new name is. Note that we put "-f -m" above so that the R > > build > > directory gets left laying around in spkg/build/. This is because > > there are still some > > issues with "make install" and R. Also, R hardcodes install paths > > in the R command, > > which is something we'll have to deal with before releasing R as an > > official optional > > package. > > > (2) > > Then to test it out see if this works: > > > sage: import rpy > > sage: rpy.r.t_test(range(100)) > > {'alternative': 'two.sided', > > 'conf.int': [43.743490583064158, 55.256509416935835], > > 'data.name': '0:99', > > 'estimate': {'mean of x': 49.5}, > > 'method': 'One Sample t-test', > > 'null.value': {'mean': 0.0}, > > 'p.value': 3.0537578007169442e-31, > > 'parameter': {'df': 99.0}, > > 'statistic': {'t': 17.062204191756354}} > > > sage: time rpy.r.t_test(range(1000000)) > > CPU times: user 1.97 s, sys: 0.12 s, total: 2.08 s > > Wall time: 2.09 > > {'alternative': 'two.sided', > > 'conf.int': [499433.7061652476, 500565.2938347524], > > 'data.name': '0:999999', > > 'estimate': {'mean of x': 499999.5}, > > 'method': 'One Sample t-test', > > 'null.value': {'mean': 0.0}, > > 'p.value': 0.0, > > 'parameter': {'df': 999999.0}, > > 'statistic': {'t': 1732.0482094941815}} > > > -- > > William Stein > > Associate Professor of Mathematics > > University of Washington > >http://wstein.org > > -- > William Stein > Associate Professor of Mathematics > University of Washingtonhttp://wstein.org --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~----------~----~----~----~------~----~------~--~---
