Re: [Rpy] Problems to install rpy2 by Terminal window

Wed, 16 Nov 2011 20:13:46 -0800 

The important bit seems to be:
/Library/Frameworks/R.framework/Resources/include/Rconfig.h:5:25: error: ppc/Rconfig.h: No such file or directory 


You may want to check what is the R on your system picked up by the rpy2 
install process and how it was installed / where it is coming from.



L.




On 2011-11-14 18:17, José Carlos Guerrero Antúnez wrote:

Hi,


I have the following message when I attempt to install rpy2 from 
terminal window.



Last login: Mon Nov 14 10:01:28 on console
iMac-de-Jose-Carlos-Guerrero-Antunez-5:~ joseca_IMac$ easy_install rpy2
Searching for rpy2
Reading http://pypi.python.org/simple/rpy2/
Reading http://rpy.sourceforge.net
Best match: rpy2 2.2.4

Downloading 
http://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.4.tar.gz#md5=0192a3c05d8d97971e2bcf888944aff5

Processing rpy2-2.2.4.tar.gz

Running rpy2-2.2.4/setup.py -q bdist_egg --dist-dir 
/var/folders/ZI/ZILrLuSdG3uvcRwKJxojRU+++TI/-Tmp-/easy_install-xiFd5y/rpy2-2.2.4/egg-dist-tmp-l3tkpF

Configuration for R as a library:

  include_dirs: ('/Library/Frameworks/R.framework/Resources/include', 
'/Library/Frameworks/R.framework/Resources/include/x86_64')

  libraries: ('Rblas', 'Rlapack')
  library_dirs: ('/Library/Frameworks/R.framework/Resources/lib/x86_64',)

  extra_link_args: ('-framework R', 
'-F/Library/Frameworks/R.framework/..')

 # OSX-specific (included in extra_link_args)
  framework_dirs: ('-F/Library/Frameworks/R.framework/..',)
  frameworks: ('-framework R',)

warning: no previously-included files matching '*patch*' found 
anywhere in distribution
warning: no previously-included files matching '*diff*' found anywhere 
in distribution
warning: no previously-included files matching '.hg' found anywhere in 
distribution

no previously-included directories found matching 'dist'
In file included from ./rpy/rinterface/_rinterface.c:63:

/Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: 
warning: function declaration isn't a prototype

In file included from ./rpy/rinterface/_rinterface.c:74:

/Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: 
warning: function declaration isn't a prototype

In file included from ./rpy/rinterface/_rinterface.c:122:
./rpy/rinterface/sequence.c: In function 'VectorSexp_ass_slice':
./rpy/rinterface/sequence.c:542: warning: unused variable 'sexp_item'
./rpy/rinterface/sequence.c:542: warning: unused variable 'tmp'
./rpy/rinterface/sequence.c:541: warning: unused variable 'vs'
./rpy/rinterface/sequence.c:478: warning: unused variable 'self_typeof'
./rpy/rinterface/_rinterface.c: At top level:

./rpy/rinterface/sequence.c:2173: warning: 'ComplexVectorSexp_AsSexp' 
defined but not used

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ShowFiles':

./rpy/rinterface/_rinterface.c:738: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_FlushConsole':

./rpy/rinterface/_rinterface.c:592: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ReadConsole':

./rpy/rinterface/_rinterface.c:460: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_WriteConsole':

./rpy/rinterface/_rinterface.c:318: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ShowMessage':

./rpy/rinterface/_rinterface.c:392: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_CleanUp':

./rpy/rinterface/_rinterface.c:886: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ChooseFile':

./rpy/rinterface/_rinterface.c:636: warning: 'gstate' may be used 
uninitialized in this function
In file included from 
/Library/Frameworks/R.framework/Resources/include/R.h:34,

                 from ./rpy/rinterface/_rinterface.c:61:

/Library/Frameworks/R.framework/Resources/include/Rconfig.h:5:25: 
error: ppc/Rconfig.h: No such file or directory

In file included from ./rpy/rinterface/_rinterface.c:62:

/Library/Frameworks/R.framework/Resources/include/Rversion.h:5:26: 
error: ppc/Rversion.h: No such file or directory

In file included from ./rpy/rinterface/_rinterface.c:63:

/Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: 
warning: function declaration isn't a prototype

In file included from ./rpy/rinterface/_rinterface.c:74:

/Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: 
warning: function declaration isn't a prototype

In file included from ./rpy/rinterface/_rinterface.c:100:

./rpy/rinterface/r_utils.h:13: error: 'R_MAJOR' undeclared here (not 
in a function)
./rpy/rinterface/r_utils.h:13: error: 'R_MINOR' undeclared here (not 
in a function)
./rpy/rinterface/r_utils.h:13: error: 'R_STATUS' undeclared here (not 
in a function)
./rpy/rinterface/r_utils.h:14: error: 'R_SVN_REVISION' undeclared here 
(not in a function)

In file included from ./rpy/rinterface/_rinterface.c:122:
./rpy/rinterface/sequence.c: In function 'VectorSexp_ass_slice':
./rpy/rinterface/sequence.c:542: warning: unused variable 'sexp_item'
./rpy/rinterface/sequence.c:542: warning: unused variable 'tmp'
./rpy/rinterface/sequence.c:541: warning: unused variable 'vs'
./rpy/rinterface/sequence.c:478: warning: unused variable 'self_typeof'
In file included from ./rpy/rinterface/_rinterface.c:63:

/Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: 
warning: function declaration isn't a prototype

In file included from ./rpy/rinterface/_rinterface.c:74:

/Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: 
warning: function declaration isn't a prototype

In file included from ./rpy/rinterface/_rinterface.c:122:
./rpy/rinterface/sequence.c: In function 'VectorSexp_ass_slice':
./rpy/rinterface/sequence.c:542: warning: unused variable 'sexp_item'
./rpy/rinterface/sequence.c:542: warning: unused variable 'tmp'
./rpy/rinterface/sequence.c:541: warning: unused variable 'vs'
./rpy/rinterface/sequence.c:478: warning: unused variable 'self_typeof'
./rpy/rinterface/_rinterface.c: At top level:

./rpy/rinterface/sequence.c:2173: warning: 'ComplexVectorSexp_AsSexp' 
defined but not used

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ShowFiles':

./rpy/rinterface/_rinterface.c:738: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_FlushConsole':

./rpy/rinterface/_rinterface.c:592: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ReadConsole':

./rpy/rinterface/_rinterface.c:460: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_WriteConsole':

./rpy/rinterface/_rinterface.c:318: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ShowMessage':

./rpy/rinterface/_rinterface.c:392: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_CleanUp':

./rpy/rinterface/_rinterface.c:886: warning: 'gstate' may be used 
uninitialized in this function

./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ChooseFile':

./rpy/rinterface/_rinterface.c:636: warning: 'gstate' may be used 
uninitialized in this function
lipo: can't open input file: 
/var/folders/ZI/ZILrLuSdG3uvcRwKJxojRU+++TI/-Tmp-//ccGhHSfq.out (No 
such file or directory)
error: Setup script exited with error: command 'gcc-4.2' failed with 
exit status 1

iMac-de-Jose-Carlos-Guerrero-Antunez-5:~ joseca_IMac$

Best regards,


--
################################################################
Dr. José Carlos Guerrero

Laboratorio de Desarrollo Sustentable y Gestión Ambiental del 
Territorio (LDSGAT)

Instituto de Ecología y Ciencias Ambientales (IECA)
Facultad de Ciencias
Universidad de la República
Montevideo-URUGUAY
################################################################



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