Hi
I am trying to install Rpy2 on a centos 6 -x64 system.
However I am getting an error- the full log of error is given below--
[root@localhost rpy2-2.2.3]# python setup.py install
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.6
creating build/lib.linux-x86_64-2.6/rpy2
copying ./rpy/tests.py -> build/lib.linux-x86_64-2.6/rpy2
copying ./rpy/tests_rpy_classic.py -> build/lib.linux-x86_64-2.6/rpy2
copying ./rpy/rpy_classic.py -> build/lib.linux-x86_64-2.6/rpy2
copying ./rpy/__init__.py -> build/lib.linux-x86_64-2.6/rpy2
creating build/lib.linux-x86_64-2.6/rpy2/rlike
copying ./rpy/rlike/indexing.py -> build/lib.linux-x86_64-2.6/rpy2/rlike
copying ./rpy/rlike/container.py -> build/lib.linux-x86_64-2.6/rpy2/rlike
copying ./rpy/rlike/functional.py -> build/lib.linux-x86_64-2.6/rpy2/rlike
copying ./rpy/rlike/__init__.py -> build/lib.linux-x86_64-2.6/rpy2/rlike
creating build/lib.linux-x86_64-2.6/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_functional.py ->
build/lib.linux-x86_64-2.6/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_container.py ->
build/lib.linux-x86_64-2.6/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_indexing.py ->
build/lib.linux-x86_64-2.6/rpy2/rlike/tests
copying ./rpy/rlike/tests/__init__.py ->
build/lib.linux-x86_64-2.6/rpy2/rlike/tests
creating build/lib.linux-x86_64-2.6/rpy2/rinterface
copying ./rpy/rinterface/__init__.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface
creating build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpExtPtr.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVector.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Device.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Sexp.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpClosure.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_EmbeddedR.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpEnvironment.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/__init__.py ->
build/lib.linux-x86_64-2.6/rpy2/rinterface/tests
creating build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/constants.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/functions.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/packages.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/environments.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/conversion.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/methods.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/vectors.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/robject.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/language.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/help.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/numpy2ri.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
copying ./rpy/robjects/__init__.py -> build/lib.linux-x86_64-2.6/rpy2/robjects
creating build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testLanguage.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRObject.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testPackages.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testNumpyConversions.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testHelp.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRobjects.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFormula.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testVector.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testDataFrame.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testEnvironment.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFunction.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testMethods.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/testArray.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
copying ./rpy/robjects/tests/__init__.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/tests
creating build/lib.linux-x86_64-2.6/rpy2/robjects/lib
copying ./rpy/robjects/lib/grid.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/lib
copying ./rpy/robjects/lib/ggplot2.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/lib
copying ./rpy/robjects/lib/__init__.py ->
build/lib.linux-x86_64-2.6/rpy2/robjects/lib
creating build/lib.linux-x86_64-2.6/rpy2/interactive
copying ./rpy/interactive/process_revents.py ->
build/lib.linux-x86_64-2.6/rpy2/interactive
copying ./rpy/interactive/__init__.py ->
build/lib.linux-x86_64-2.6/rpy2/interactive
creating build/lib.linux-x86_64-2.6/rpy2/interactive/tests
copying ./rpy/interactive/tests/__init__.py ->
build/lib.linux-x86_64-2.6/rpy2/interactive/tests
running build_ext
R was not built as a library
Traceback (most recent call last):
File "setup.py", line 441, in <module>
[os.path.join('doc', 'source', 'rpy2_logo.png')])],
File "/usr/lib64/python2.6/distutils/core.py", line 152, in setup
dist.run_commands()
File "/usr/lib64/python2.6/distutils/dist.py", line 975, in run_commands
self.run_command(cmd)
File "/usr/lib64/python2.6/distutils/dist.py", line 995, in run_command
cmd_obj.run()
File "/usr/lib64/python2.6/distutils/command/install.py", line 577, in run
self.run_command('build')
File "/usr/lib64/python2.6/distutils/cmd.py", line 333, in run_command
self.distribution.run_command(command)
File "/usr/lib64/python2.6/distutils/dist.py", line 995, in run_command
cmd_obj.run()
File "/usr/lib64/python2.6/distutils/command/build.py", line 134, in run
self.run_command(cmd_name)
File "/usr/lib64/python2.6/distutils/cmd.py", line 333, in run_command
self.distribution.run_command(command)
File "/usr/lib64/python2.6/distutils/dist.py", line 994, in run_command
cmd_obj.ensure_finalized()
File "/usr/lib64/python2.6/distutils/cmd.py", line 117, in ensure_finalized
self.finalize_options()
File "setup.py", line 152, in finalize_options
config += get_rconfig(r_home, about)
File "setup.py", line 312, in get_rconfig
rc = RConfig.from_string(rconfig, allow_empty = allow_empty)
File "setup.py", line 272, in from_string
+ '\nin string\n' + string)
ValueError: Invalid substring
in string
Kindly help me in fixing this so that I can install Rpy2 -- pls bear with me,
as I am new to Rpy2...
Regards,
Arvind.
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