Hi,
I'm using python 2.6 in windows 7 x64 with rpy 1.5.1 and R 2.9.1 and what
I'm trying to do is run R.arima models (and predictions) using python's
multiprocessing pool.map function and I keep getting the following error:
Traceback (most recent call last):
File "c:\Python26\lib\multiprocessing\process.py", line 231, in _bootstrap
self.run()
File "c:\Python26\lib\multiprocessing\process.py", line 88, in run
self._target(*self._args, **self._kwargs)
File "c:\Python26\lib\multiprocessing\pool.py", line 71, in worker
put((job, i, result))
PicklingError: Can't pickle <class 'rpy.RPy_RException'>: attribute lookup
rpy.RPy_RException failed
Below is a snippet of my code:
import time
import multiprocessing
from rpy import *
def _pickle_method(method):
func_name = method.im_func.__name__
obj = method.im_self
cls = method.im_class
return _unpickle_method,(func_name,obj,cls)
def _unpickle_method(func_name,obj,cls):
for cls in cls.mro():
try:
func = cls.__dict__[func_name]
except KeyError:
pass
else:
break
return func.__get__(obj,cls)
import copy_reg
import types
copy_reg.pickle(types.MethodType, _pickle_method, _unpickle_method)
def testLoop(args):
loop_test = args[0]
raw_datas = args[1]
rows = args[2]
set_default_mode(NO_CONVERSION)
ts = r.ts(raw_datas,frequency=rows)
tmp =
r.arima(ts,order=r.c(loop_test[0],loop_test[1],loop_test[2]),seasonal=r.list(order=r.c(loop_test[3],loop_test[4],loop_test[5])))
set_default_mode(BASIC_CONVERSION)
s = r.predict(tmp,rows)
return s
def functionTesterMain(pool,num_processes,raw_datas,rows):
loops = [[1, 0, 1, 0, 0, 0], [1, 0, 1, 0, 1, 0], [1, 0, 1, 0, 2, 0], [1,
1, 1, 0, 0, 0], [1, 1, 1, 0, 1, 0], [1, 1, 1, 0, 2, 0], [1, 2, 1, 0, 0, 0],
[1, 2, 1, 0, 1, 0],[1, 2, 1, 0, 2, 0],[1, 0, 1, 0, 0, 1],[1, 0, 1, 0, 0, 3],
[1, 0, 1, 0, 1, 3], [1, 0, 1, 0, 2, 3]]
num_args = []
for n in loops:
p = [n,raw_datas,rows]
num_args.append(p)
rss = pool.map(testLoop,num_args)
return rss
if __name__ == '__main__':
num_processes = multiprocessing.cpu_count()
pool = multiprocessing.Pool(num_processes)
for i in range(1,4):
j = [i]*20
a = functionTesterMain(pool,num_processes,j,10)
print "-----------"
print "a " + str(a)
I've added the copy_reg functions to help with pickling unbounded functions
but I dont think that is causing the errors here. Can anyone help me with
it? I'm trying to use new versions of R and RPy but the windows binaries for
them don't seem to work with python 2.6 so i've settled with the ones that
work with it.
Thanks again for any help
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