On 19/10/10 23:09, Aman Thakral wrote:
Hi,
I'm having some issues with LAPACK. Here is the result of python -m
"rpy2.tests"
rpy2 version 2.1.7
..............................................................................................................................getbuffer
.getbuffer
/usr/local/lib/python2.6/dist-packages/numpy-1.5.0b2-py2.6-linux-i686.egg/numpy
May be off-topic, but Numpy 1.5.0-release is available
(latest is 1.5.1rc1).
/core/numeric.py:284: RuntimeWarning: Item size computed from the PEP
3118 buffer format string does not match the actual item size.
return array(a, dtype, copy=False, order=order)
.getbuffer
.getbuffer
.................................................Error in function (x,
symmetric, only.values = FALSE, EISPACK = FALSE) :
lapack routines cannot be loaded
In addition: Warning message:
In function (x, symmetric, only.values = FALSE, EISPACK = FALSE) :
unable to load shared object '/usr/local/lib/R/modules//lapack.so':
libRlapack.so: cannot open shared object file: No such file or directory
E..Error in La.svd(x, nu, nv) : lapack routines cannot be loaded
I suspect a mismatch between the R installation rpy2 was compiled
against and the R installation this is run with.
libRlapack.so should be in '/usr/local/lib/R/lib/' (but it is not).
Are you linkingR against a system-wide LAPACK ?
E.............................................................................................
======================================================================
ERROR: testEigen (rpy2.robjects.tests.testArray.MatrixTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/local/lib/python2.6/dist-packages/rpy2-2.1.7_20101019-py2.6-linux-i686.egg/rpy2/robjects/tests/testArray.py",
line 91, in testEigen
res = m.eigen()
File
"/usr/local/lib/python2.6/dist-packages/rpy2-2.1.7_20101019-py2.6-linux-i686.egg/rpy2/robjects/vectors.py",
line 457, in eigen
res = self._eigen(self)
RRuntimeError: Error in function (x, symmetric, only.values = FALSE,
EISPACK = FALSE) :
lapack routines cannot be loaded
======================================================================
ERROR: testSVD (rpy2.robjects.tests.testArray.MatrixTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/local/lib/python2.6/dist-packages/rpy2-2.1.7_20101019-py2.6-linux-i686.egg/rpy2/robjects/tests/testArray.py",
line 85, in testSVD
res = m.svd()
File
"/usr/local/lib/python2.6/dist-packages/rpy2-2.1.7_20101019-py2.6-linux-i686.egg/rpy2/robjects/vectors.py",
line 447, in svd
res = self._svd(self, nu = nu, nv = nv, LINPACK = False)
RRuntimeError: Error in La.svd(x, nu, nv) : lapack routines cannot be
loaded
----------------------------------------------------------------------
Ran 275 tests in 3.655s
FAILED (errors=2)
I've tried to add the /usr/local/lib/R/bin folder to the path. This
however, did not fix the issue. Any help with this matter would be
greatly appreciated.
Thanks,
Aman
------------------------------------------------------------------------------
Download new Adobe(R) Flash(R) Builder(TM) 4
The new Adobe(R) Flex(R) 4 and Flash(R) Builder(TM) 4 (formerly
Flex(R) Builder(TM)) enable the development of rich applications that run
across multiple browsers and platforms. Download your free trials today!
http://p.sf.net/sfu/adobe-dev2dev
_______________________________________________
rpy-list mailing list
rpy-list@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rpy-list
------------------------------------------------------------------------------
Download new Adobe(R) Flash(R) Builder(TM) 4
The new Adobe(R) Flex(R) 4 and Flash(R) Builder(TM) 4 (formerly
Flex(R) Builder(TM)) enable the development of rich applications that run
across multiple browsers and platforms. Download your free trials today!
http://p.sf.net/sfu/adobe-dev2dev
_______________________________________________
rpy-list mailing list
rpy-list@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rpy-list
