On 3/30/10 4:20 AM, Yaroslav Halchenko wrote:
> GREAT -- keep on the progressing forward!
>
> My humble feedback:
>
> $> python2.6 -m rpy2.tests; python2.6 -c 'import rpy2; print
> rpy2.__version__'; dpkg -l r-base-core
>
> ...F...Error in function (new = FALSE) : file choice cancelled
> .................................................................................F......Loading
> required package: splines
> ............Error in function (x) : object 'y' not found
> ....Error in .Primitive("sum")(c("a", "b", "c", "d", "e", "f", "g", "h", "i",
> :
> invalid 'type' (character) of argument
> .................Error in function (description, open = "", blocking = FALSE,
> encoding = getOption("encoding")) :
> cannot open the connection
> In addition: Warning message:
> In function (description, open = "", blocking = FALSE, encoding =
> getOption("encoding")) :
> cannot create fifo '/home/yoh/.tmp/Rtmpne9cVP/Rf327b23c6', reason 'No such
> file or directory'
> E..............................Error in .Primitive("[")(0:10, list("a", "b",
> "c")) :
> invalid subscript type 'list'
> ..........................................................................................................
> ======================================================================
> ERROR: testStr (rpy2.robjects.tests.testRObject.RObjectTestCase)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py",
> line 30, in testStr
> s = prt.__str__()
> File
> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/robject.py",
> line 29, in __str__
> tmp = self.__fifo(rpy2.rinterface.StrSexpVector(["", ]))
> RRuntimeError: Error in function (description, open = "", blocking = FALSE,
> encoding = getOption("encoding")) :
> cannot open the connection
>
>
> ======================================================================
> FAIL: testInterruptR (rpy2.rinterface.tests.test_EmbeddedR.EmbeddedRTestCase)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
> line 107, in testInterruptR
> self.assertFalse(ret_code is None) # Interruption failed
> AssertionError
>
> ======================================================================
> FAIL: testNARealtoR (rpy2.rinterface.tests.test_SexpVector.NAValuesTestCase)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
> line 77, in testNARealtoR
> self.assertEquals(True, ri.baseenv["is.na"](na_real)[0])
> AssertionError: True != False
>
> ----------------------------------------------------------------------
> Ran 265 tests in 1.498s
>
> FAILED (failures=2, errors=1)
This is the currently expected output from the tests. The aim is to have
a clean bill for the release candidate.
> 2.1.0beta2
> Desired=Unknown/Install/Remove/Purge/Hold
> | Status=Not/Inst/Cfg-files/Unpacked/Failed-cfg/Half-inst/trig-aWait/Trig-pend
> |/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err:
> uppercase=bad)
> ||/ Name Version
> Description
> +++-=====================================-=====================================-==========================================================================================
> ii r-base-core 2.10.1-2
> GNU R core of statistical computation and graphics system
>
>
>
> Another annoyance I've ran into today -- our pymvpa unittests keep segfaulting
> in some non-R related places whenever rpy2 is in use. It was happening with
> current version in sid: 2.1.0~20100314-1 and with current tip. Attached see
> the valgrind output for python2.5 and version 2.1.0~20100314-1 (first
> R issues seems to be not that critical -- happens also with 2.6 without
> major problems).
> (Un)fortunately this issue seems not to reveal (or being absent) with
> python2.6 ... I wonder if there is anything I could help/do to figure
> it out for 2.5 ;)
>
The best you can you is to narrow it down to something a little more
specific. Unfortunately I can't currently spend time on Python
2.5-specific issues.
>
> On Mon, 29 Mar 2010, Laurent Gautier wrote:
>
>> Hi,
>
>> rpy2-2.1beta3 is out and available on bitbucket and on sourceforge.
>> This fixes bugs (such as a memory leak), plus adds last minute details.
>> The next expected step is the release candidate, then the release.
>
>
>> L.
>
>> ------------------------------------------------------------------------------
>> Download Intel® Parallel Studio Eval
>> Try the new software tools for yourself. Speed compiling, find bugs
>> proactively, and fine-tune applications for parallel performance.
>> See why Intel Parallel Studio got high marks during beta.
>> http://p.sf.net/sfu/intel-sw-dev
>> _______________________________________________
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>
>
>
>
> ------------------------------------------------------------------------------
> Download Intel® Parallel Studio Eval
> Try the new software tools for yourself. Speed compiling, find bugs
> proactively, and fine-tune applications for parallel performance.
> See why Intel Parallel Studio got high marks during beta.
> http://p.sf.net/sfu/intel-sw-dev
>
>
>
> _______________________________________________
> rpy-list mailing list
> rpy-list@lists.sourceforge.net
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------------------------------------------------------------------------------
Download Intel® Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
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