should we expect all unittests to pass? ;)
I am getting following with 1093:198d59806bee
$> python2.6 -c 'import rpy2.tests, unittest; tr =
unittest.TextTestRunner(verbosity = 1); suite = rpy2.tests.suite();
tr.run(suite)'
...F...Error in function (new = FALSE) : file choice cancelled
.......F..F............................F....................................Error:
unimplemented type 'char' in 'eval'
E....F...F..Loading required package: splines
............Error in function (x) : object 'y' not found
....Error in .Primitive("sum")(c("a", "b", "c", "d", "e", "f", "g", "h", "i",
:
invalid 'type' (character) of argument
.................Error in function (description, open = "", blocking = FALSE,
encoding = getOption("encoding")) :
cannot open the connection
In addition: Warning message:
In function (description, open = "", blocking = FALSE, encoding =
getOption("encoding")) :
cannot create fifo '/home/yoh/.tmp/RtmpGRWQ7r/Rf327b23c6', reason 'No such
file or directory'
E(/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py:61):
testPickle
61 tmp_file = tempfile.NamedTemporaryFile()
(Pydb)
E.............................Error in .Primitive("[")(0:10, list("a", "b",
"c")) :
invalid subscript type 'list'
..................................................................F.......................................
======================================================================
ERROR: testNACharactertoR
(rpy2.rinterface.tests.test_SexpVector.NAValuesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
line 90, in testNACharactertoR
self.assertEquals(True, ri.baseenv["is.na"](na_character)[0])
RRuntimeError: Error: unimplemented type 'char' in 'eval'
======================================================================
ERROR: testStr (rpy2.robjects.tests.testRObject.RObjectTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py",
line 30, in testStr
s = prt.__str__()
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/robject.py", line
29, in __str__
tmp = self.__fifo(rpy2.rinterface.StrSexpVector(["", ]))
RRuntimeError: Error in function (description, open = "", blocking = FALSE,
encoding = getOption("encoding")) :
cannot open the connection
======================================================================
ERROR: testPickle (rpy2.robjects.tests.testRObject.RObjectPicklingTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py",
line 61, in testPickle
tmp_file = tempfile.NamedTemporaryFile()
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py",
line 61, in testPickle
tmp_file = tempfile.NamedTemporaryFile()
File "/usr/lib/pymodules/python2.6/pydb/gdb.py", line 249, in
trace_dispatch_gdb
sys.exit()
SystemExit
======================================================================
FAIL: testInterruptR (rpy2.rinterface.tests.test_EmbeddedR.EmbeddedRTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
line 107, in testInterruptR
self.assertFalse(ret_code is None) # Interruption failed
AssertionError
======================================================================
FAIL: testSetShowMessage
(rpy2.rinterface.tests.test_EmbeddedR.CallbacksTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
line 214, in testSetShowMessage
self.assertTrue(False) # no unit test (yet)
AssertionError
======================================================================
FAIL: testShowMessageWithError
(rpy2.rinterface.tests.test_EmbeddedR.CallbacksTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
line 220, in testShowMessageWithError
self.assertTrue(False) # no unit test (yet)
AssertionError
======================================================================
FAIL: testGetItemLang (rpy2.rinterface.tests.test_SexpVector.SexpVectorTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
line 241, in testGetItemLang
self.assertEquals(ri.LANGSXP, y.typeof)
AssertionError: 6 != 1
======================================================================
FAIL: testNARealtoR (rpy2.rinterface.tests.test_SexpVector.NAValuesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
line 77, in testNARealtoR
self.assertEquals(True, ri.baseenv["is.na"](na_real)[0])
AssertionError: True != False
======================================================================
FAIL: testRtoNAReal (rpy2.rinterface.tests.test_SexpVector.NAValuesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
line 73, in testRtoNAReal
self.assertTrue(r_na_real is na_real)
AssertionError
======================================================================
FAIL: testVectorUnicodeCharacter
(rpy2.robjects.tests.testNumpyConversions.NumpyConversionsTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testNumpyConversions.py",
line 53, in testVectorUnicodeCharacter
self.assertTrue(False) # arrays of unicode characters causing segfault
AssertionError
----------------------------------------------------------------------
Ran 265 tests in 2.699s
FAILED (failures=7, errors=3)
On Sat, 13 Mar 2010, Laurent Gautier wrote:
> Hi,
> rpy2-2.1beta is out. Stability issues since 2.1.0alpha3 were addressed.
> Source packages are available on bitbucket and sourceforge.
> Win32 compilation, and eventually binaries, could come next and be
> available for the release candidate thanks to an anonymous patch
> contribution.
> Laurent
> ------------------------------------------------------------------------------
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Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
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