The high level unit tests fail for me with rpy2 v2.1.0alpha3, python
2.6.4 and R 2.9.2:
Python 2.6.4 (r264:75706, Feb 10 2010, 14:06:31)
[GCC 4.1.2 20080704 (Red Hat 4.1.2-44)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import rpy2.robjects.tests
During startup - Warning messages:
1: package 'methods' was built under R version 2.9.2
2: package 'datasets' was built under R version 2.9.2
3: package 'utils' was built under R version 2.9.2
4: package 'grDevices' was built under R version 2.9.2
5: package 'graphics' was built under R version 2.9.2
6: package 'stats' was built under R version 2.9.2
>>> import unittest
>>> tr = unittest.TextTestRunner(verbosity = 1)
>>> suite = rpy2.robjects.tests.suite()
>>> tr.run(suite)
....................................Error in .Primitive("[")(0:10,
list("a", "b", "c")) :
invalid subscript type 'list'
..................................................................F....
======================================================================
FAIL: testVectorUnicodeCharacter
(rpy2.robjects.tests.testNumpyConversions.NumpyConversionsTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "rpy2/robjects/tests/testNumpyConversions.py", line 53, in
testVectorUnicodeCharacter
self.assertTrue(False) # arrays of unicode characters causing segfault
AssertionError
----------------------------------------------------------------------
Ran 107 tests in 0.732s
FAILED (failures=1)
<unittest._TextTestResult run=107 errors=0 failures=1>
Anyone have any ideas, before I ditch rpy2 and revert to good-old rpy?
--
Cheers,
Nick Schurch
Data Analysis Group (The Barton Group),
School of Life Sciences,
University of Dundee,
Dow St,
Dundee,
DD1 5EH,
Scotland,
UK
Tel: +44 1382 388707
Fax: +44 1382 345 893
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