Bugs item #2892131, was opened at 2009-11-04 20:32
Message generated for change (Settings changed) made by lgautier
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Category: Build
Group: rpy2
>Status: Closed
Resolution: None
Priority: 5
Private: No
Submitted By: Nobody/Anonymous (nobody)
>Assigned to: lgautier (lgautier)
Summary: rpy2-2.0.6 fails tests
Initial Comment:
Hi
I am tesing rpy2 on linux with the following recipe:
# python setup.py build
# cd build/lib*
# PYTHONPATH=. python py2/tests.py
3 tests fail, Linux x86_64, numpy-1.3, python-2.6.4
Here is the output:
.......................Error in .Primitive("[")(0:10, list("a", "b", "c")) :
invalid subscript type 'list'
..........................................F.......................F.....Loading
required package: splines
.....................Error in function (x) : object 'y' not found
...Error in .Primitive("sum")(c("a", "b", "c", "d", "e", "f", "g", "h", "i", :
invalid 'type' (character) of argument
.......F............................................
======================================================================
FAIL: testVectorUnicodeCharacter
(rpy2.robjects.tests.testNumpyConversions.NumpyConversionsTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/var/tmp/portage/dev-python/rpy-2.0.6/work/rpy2-2.0.6/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testNumpyConversions.py",
line 54, in testVectorUnicodeCharacter
self.assertTrue(False) # arrays of unicode characters causing segfault
AssertionError
======================================================================
FAIL: testNewWithoutInit
(rpy2.rinterface.tests.test_SexpVector.SexpVectorTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/var/tmp/portage/dev-python/rpy-2.0.6/work/rpy2-2.0.6/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
line 43, in testNewWithoutInit
self.assertTrue(False) # worked when tested, but calling endEmbeddedR
causes trouble
AssertionError
======================================================================
FAIL: testCallErrorWhenEndedR
(rpy2.rinterface.tests.test_EmbeddedR.EmbeddedRTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/var/tmp/portage/dev-python/rpy-2.0.6/work/rpy2-2.0.6/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
line 122, in testCallErrorWhenEndedR
self.assertTrue(False) # worked when tested, but calling endEmbeddedR
causes trouble
AssertionError
----------------------------------------------------------------------
Ran 171 tests in 0.488s
FAILED (failures=3)
----------------------------------------------------------------------
>Comment By: lgautier (lgautier)
Date: 2009-11-04 20:51
Message:
Thanks.
The bugs are known since the tests , and the number of expected failures
almost correctly documented
(http://rpy.sourceforge.net/rpy2/doc/html/overview.html#test-an-installation).
The documentation for version 2.0.8 will have a more specific warning.
----------------------------------------------------------------------
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