Revision: 573
http://rpy.svn.sourceforge.net/rpy/?rev=573&view=rev
Author: lgautier
Date: 2008-07-05 07:48:02 -0700 (Sat, 05 Jul 2008)
Log Message:
-----------
robjects:
- Experimental class RDataFrame
Modified Paths:
--------------
branches/rpy_nextgen/rpy/robjects/__init__.py
branches/rpy_nextgen/rpy/robjects/tests/__init__.py
branches/rpy_nextgen/rpy/robjects/tests/testRArray.py
Added Paths:
-----------
branches/rpy_nextgen/rpy/robjects/tests/testRDataFrame.py
Modified: branches/rpy_nextgen/rpy/robjects/__init__.py
===================================================================
--- branches/rpy_nextgen/rpy/robjects/__init__.py 2008-07-05 14:44:57 UTC
(rev 572)
+++ branches/rpy_nextgen/rpy/robjects/__init__.py 2008-07-05 14:48:02 UTC
(rev 573)
@@ -18,14 +18,22 @@
#FIXME: close everything when leaving (check RPy for that).
def default_ri2py(o):
+ res = None
if isinstance(o, RObject):
res = o
elif isinstance(o, rinterface.SexpVector):
try:
- dim = o.do_slot("dim")
- res = RArray(o)
+ cl = o.do_slot("class")[0]
+ if cl == 'data.frame':
+ res = RDataFrame(o)
except LookupError, le:
- res = RVector(o)
+ pass
+ if res is None:
+ try:
+ dim = o.do_slot("dim")
+ res = RArray(o)
+ except LookupError, le:
+ res = RVector(o)
elif isinstance(o, rinterface.SexpClosure):
res = RFunction(o)
elif isinstance(o, rinterface.SexpEnvironment):
@@ -42,6 +50,7 @@
#FIXME: better names for the functions
ri2py = default_ri2py
+
def default_py2ri(o):
if isinstance(o, RObject):
res = rinterface.Sexp(o)
@@ -252,7 +261,9 @@
def __setattr__(self, name, value):
if name == 'dim':
value = py2ro(value)
- res = r["dim<-"](value)
+ res = r["dim<-"](self, value)
+ #FIXME: not properly done
+ raise(Exception("Not yet implemented"))
def getnames(self):
""" Return a list of name vectors
@@ -262,6 +273,7 @@
return res
+
class RMatrix(RArray):
""" An R matrix """
@@ -273,13 +285,43 @@
""" Number of columns """
return self.dim[1]
-class DataFrame(RVector):
- #FIXME: not implemented
- def __init__(self, o):
- raise Exception("not implemented.")
+class RDataFrame(RVector):
+ def __init__(self, *args, **kwargs):
+ if len(args) > 1:
+ raise(ValueError("Only one unnamed parameter is allowed."))
+ if len(args) == 1:
+ if len(kwargs) != 0:
+ raise(ValueError("No named parameters allowed when there is an
unnamed parameter."))
+ else:
+ super(RDataFrame, self).__init__(args[0])
+ else:
+ if len(kwargs) == 0:
+ raise(ValueError("Initialization parameters needed."))
+ df = baseNameSpaceEnv["data.frame"](**kwargs)
+ super(RDataFrame, self).__init__(df)
+ #import pdb; pdb.set_trace()
+ if not baseNameSpaceEnv["is.data.frame"](self)[0]:
+ raise(TypeError("The object must be representing an R data.frame"))
+
+ def nrow(self):
+ """ Number of rows """
+ return baseNameSpaceEnv["nrow"](self)[0]
+
+ def ncol(self):
+ """ Number of columns """
+ return baseNameSpaceEnv["ncol"](self)[0]
+
+ def rownames(self):
+ return baseNameSpaceEnv["colnames"](self)[0]
+
+ def colnames(self):
+ return baseNameSpaceEnv["colnames"](self)[0]
+
+
+
class RFunction(RObjectMixin, rinterface.SexpClosure):
""" An R function (aka "closure").
Modified: branches/rpy_nextgen/rpy/robjects/tests/__init__.py
===================================================================
--- branches/rpy_nextgen/rpy/robjects/tests/__init__.py 2008-07-05 14:44:57 UTC
(rev 572)
+++ branches/rpy_nextgen/rpy/robjects/tests/__init__.py 2008-07-05 14:48:02 UTC
(rev 573)
@@ -3,6 +3,7 @@
import testRObject
import testRVector
import testRArray
+import testRDataFrame
import testRFormula
import testRFunction
import testREnvironment
@@ -12,6 +13,7 @@
suite_RObject = testRObject.suite()
suite_RVector = testRVector.suite()
suite_RArray = testRArray.suite()
+ suite_RDataFrame = testRDataFrame.suite()
suite_RFunction = testRFunction.suite()
suite_REnvironment = testREnvironment.suite()
suite_RFormula = testRFormula.suite()
@@ -19,6 +21,7 @@
alltests = unittest.TestSuite([suite_RObject,
suite_RVector,
suite_RArray,
+ suite_RDataFrame,
suite_RFunction,
suite_REnvironment,
suite_RFormula,
Modified: branches/rpy_nextgen/rpy/robjects/tests/testRArray.py
===================================================================
--- branches/rpy_nextgen/rpy/robjects/tests/testRArray.py 2008-07-05
14:44:57 UTC (rev 572)
+++ branches/rpy_nextgen/rpy/robjects/tests/testRArray.py 2008-07-05
14:48:02 UTC (rev 573)
@@ -20,7 +20,11 @@
self.assertEquals(5, d[0])
self.assertEquals(3, d[1])
- def testGetNames(self):
+# rd = robjects.r.rev(d)
+# a.dim = rd
+
+
+ def testGetnames(self):
dimnames = robjects.r.list(['a', 'b', 'c'],
['d', 'e'])
m = robjects.r.matrix(1, nrow=3, ncol=2,
Added: branches/rpy_nextgen/rpy/robjects/tests/testRDataFrame.py
===================================================================
--- branches/rpy_nextgen/rpy/robjects/tests/testRDataFrame.py
(rev 0)
+++ branches/rpy_nextgen/rpy/robjects/tests/testRDataFrame.py 2008-07-05
14:48:02 UTC (rev 573)
@@ -0,0 +1,29 @@
+import unittest
+import rpy2.robjects as robjects
+rinterface = robjects.rinterface
+import array
+
+class RDataFrameTestCase(unittest.TestCase):
+
+ def testNew(self):
+ letters = robjects.r.letters
+ numbers = robjects.r('1:26')
+ df = robjects.RDataFrame(letters=letters, numbers=numbers)
+
+ self.assertEquals("data.frame", df.rclass()[0])
+
+ def testDim(self):
+ letters = robjects.r.letters
+ numbers = robjects.r('1:26')
+ df = robjects.RDataFrame(letters=letters, numbers=numbers)
+
+ self.assertEquals(26, df.nrow())
+ self.assertEquals(2, df.ncol())
+
+
+def suite():
+ suite = unittest.TestLoader().loadTestsFromTestCase(RDataFrameTestCase)
+ return suite
+
+if __name__ == '__main__':
+ unittest.main()
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