Revision: 540
http://rpy.svn.sourceforge.net/rpy/?rev=540&view=rev
Author: lgautier
Date: 2008-06-01 03:54:18 -0700 (Sun, 01 Jun 2008)
Log Message:
-----------
- automagic guessing of R_HOME on win32 (R RHOME seems to be
working on win32 with R-2.7.0patched)
- fixed types for numpy. More tests for numpy array (and
considering dropping the (tentative) support for numarray and Numeric.
Modified Paths:
--------------
branches/rpy_nextgen/rpy/rinterface/__init__.py
branches/rpy_nextgen/rpy/rinterface/array.c
branches/rpy_nextgen/rpy/rinterface/tests/
test_SexpVectorNumeric.py
Modified: branches/rpy_nextgen/rpy/rinterface/__init__.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/__init__.py 2008-05-30
09:23:36 UTC (rev 539)
+++ branches/rpy_nextgen/rpy/rinterface/__init__.py 2008-06-01
10:54:18 UTC (rev 540)
@@ -3,8 +3,6 @@
try:
R_HOME = os.environ["R_HOME"]
except KeyError:
- if sys.platform == 'win32':
- raise Exception("The variable R_HOME is not defined.")
R_HOME = os.popen("R RHOME").readlines()
#Twist if 'R RHOME' spits out a warning
if R_HOME[0].startswith("WARNING"):
Modified: branches/rpy_nextgen/rpy/rinterface/array.c
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/array.c 2008-05-30 09:23:36
UTC (rev 539)
+++ branches/rpy_nextgen/rpy/rinterface/array.c 2008-06-01 10:54:18
UTC (rev 540)
@@ -30,12 +30,13 @@
sexp_typekind(SEXP sexp)
{
switch (TYPEOF(sexp)) {
- case REALSXP: return 'd';
- case INTSXP: return 'l';
+ case REALSXP: return 'f';
+ case INTSXP: return 'i';
//FIXME: handle strings ?
//case STRSXP: return 'S';
- case CPLXSXP: return 'D';
- //case LGLSXP: return 'b';
+ //FIXME: handle 'O' (as R list ?)
+ case CPLXSXP: return 'c';
+ case LGLSXP: return 'b';
}
return 0;
}
Modified: branches/rpy_nextgen/rpy/rinterface/tests/
test_SexpVectorNumeric.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/tests/
test_SexpVectorNumeric.py 2008-05-30 09:23:36 UTC (rev 539)
+++ branches/rpy_nextgen/rpy/rinterface/tests/
test_SexpVectorNumeric.py 2008-06-01 10:54:18 UTC (rev 540)
@@ -33,28 +33,34 @@
px = [1,-2,3]
x = rinterface.SexpVector(px, rinterface.INTSXP)
nx = numericModule.asarray(x)
- self.assertEquals('i', nx.typecode())
+ self.assertEquals(nx.dtype.kind, 'i')
for orig, new in itertools.izip(px, nx):
self.assertEquals(orig, new)
- self.assertTrue(False)
+ # change value in the Python array... makes it change in the R
vector
+ nx[1] = 12
+ self.assertEquals(x[1], 12)
+
def testArrayStructDouble(self, numericModule):
px = [1.0, -2.0, 3.0]
x = rinterface.SexpVector(px, rinterface.REALSXP)
nx = numericModule.asarray(x)
- self.assertEquals('f', nx.typecode())
+ self.assertEquals(nx.dtype.kind, 'f')
for orig, new in itertools.izip(px, nx):
self.assertEquals(orig, new)
- self.assertTrue(False)
+
+ # change value in the Python array... makes it change in the R
vector
+ nx[1] = 333.2
+ self.assertEquals(x[1], 333.2)
def testArrayStructComplex(self, numericModule):
px = [1+2j, 2+5j, -1+0j]
x = rinterface.SexpVector(px, rinterface.CPLXSXP)
nx = numericModule.asarray(x)
- self.assertEquals('D', nx.typecode())
+ self.assertEquals(nx.dtype.kind, 'c')
for orig, new in itertools.izip(px, nx):
self.assertEquals(orig, new)
- self.assertTrue(False)
+
class SexpVectorNumericTestCase(unittest.TestCase):
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