Bugs item #1690387, was opened at 2007-03-29 08:23
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Category: None
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Dion (redl0tus)
Assigned to: Nobody/Anonymous (nobody)
Summary: Problems starting rpy on Debian and Ubuntu
Initial Comment:
I have various Debian/Ubuntu machines, all with different problems starting rpy.
1)
Linux (Debian Testing) 2.6.18-3-686 i686 GNU/Linux
R version 2.4.0 Patched (2006-11-25 r39997)
Python 2.4.4 (#2, Jan 13 2007, 17:50:26)
[GCC 4.1.2 20061115 (prerelease) (Debian 4.1.1-21)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import rpy
RHOME= /usr/lib/R
RVERSION= 2.4.0
RVER= 2040
RUSER= /home/dion
Loading Rpy version 2040 ..Error in checkConflicts(value) : unimplemented type
'character' in 'asLogical'
Done.
Creating the R object 'r' ..Error in get(x, envir, mode, inherits) : variable
"help" was not found
Traceback (most recent call last):
File "<stdin>", line 1, in ?
File "/usr/lib/python2.4/site-packages/rpy.py", line 318, in ?
r = R()
File "/usr/lib/python2.4/site-packages/rpy.py", line 269, in __init__
self.helpfun = with_mode(NO_CONVERSION, self.__getitem__('help'))
File "/usr/lib/python2.4/site-packages/rpy.py", line 290, in __getitem__
obj = self.__dict__[name] = self.__dict__.get(name, self.get(name))
rpy.RException: Error in get(x, envir, mode, inherits) : variable "help" was
not found
2)
Linux (Ubuntu/Edgy) 2.6.17-11-386 #2 i686 GNU/Linux
R Version 2.3.1 (2006-06-01)
Python 2.4.4c1 (#2, Oct 11 2006, 21:51:02)
[GCC 4.1.2 20060928 (prerelease) (Ubuntu 4.1.1-13ubuntu5)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import rpy
RHOME= /usr/lib/R
RVERSION= 2.3.1
RVER= 2031
RUSER= /home/dion
Loading Rpy version 2031 ..Error in lazyLoadDBfetch(key, datafile, compressed,
envhook) :
ReadItem: unknown type 241
Done.
Creating the R object 'r' ..Error in as.double(NA) : recursive default argument
reference
Traceback (most recent call last):
File "<stdin>", line 1, in ?
File "/usr/lib/python2.4/site-packages/rpy.py", line 318, in ?
r = R()
File "/usr/lib/python2.4/site-packages/rpy.py", line 268, in __init__
self.NAN = self('as.double(NA)')
File "/usr/lib/python2.4/site-packages/rpy.py", line 294, in __call__
return self.eval(self.parse(text=s))
rpy.RException: Error in as.double(NA) : recursive default argument reference
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