Hi,
Please see the attached image for (1) and (2).
1. If I render a molecule via 'SVG(svg)', I get the dotted aromatic
representation.
2. If I render it just by displaying 'MolFromSmiles(smi)', I get the
kekulized representation.
So I guessed that (for some reason) when SVG is used, RDKit automatically
uses the dotted representation.
3. However, if I display MolsToGridImage(mol, useSVG=True), I get the
kekulized form. (This method does not return an SVG, and therefore I cannot
display it using 'SVG(result)' ).
So I have several questions:
a. Is there a way to force MolsToGridImage to return the dotted aromatic
representation? Or to postprocess the result to achieve this?
b. What is the underlying paradigm which dictates which representation will
be shown, and how can it be controlled?
c. What I would really like is the "circle" representation (i.e., benzene
as a hexagon with a circle inside). Can this be achieved, and if so, how?
Thank you,
-P.
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