Jupyter is quite clever about how it renders objects. Essentially the last
object in scope is examined for special properties, like __svg__ in this case.
In a loop, this doesn't happen the way you might expect.
You might want to use MolsToGridImage in this case. Greg also recently made an
svg version of this recently, but I don't think it is officially released yet.
If you need something right now, there are some Python utilities for combining
svg images:
https://github.com/astraw/svg_stack/blob/master/README.rst
----
Brian Kelley
> On Oct 10, 2016, at 2:32 AM, Peter S. Shenkin <[email protected]> wrote:
>
> Please see the attached .png and .ipynb.
>
> Basically, this renders:
>
> svg = render_mol(m, q)
> SVG(svg)
>
> But this does not render:
>
> if (True):
> svg = render_mol(m, q)
> SVG(svg)
>
> Nor does rendering work within a for loop, a function, or a method.
>
> Where this is going is that I want to make a list of SMILES, put them in a
> list, and render them all.
>
> Thanks,
> -P.
>
>
> <Render_outermost.png>
> <Render_outermost.ipynb>
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