HI Alexey,
If you look carefully at the error message:
On Wed, Nov 12, 2014 at 3:47 PM, Alexey Chernobrovkin <
[email protected]> wrote:
>
> ==> Summary
> 🍺 /usr/local/Cellar/rdkit/2014.09.1: 896 files, 38M, built in 3.2 minutes
>
>
> λ 130-229-33-223 ~ → python
> Python 2.7.8 (default, Oct 27 2014, 14:17:15)
> [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.54)] on darwin
> Type "help", "copyright", "credits" or "license" for more information.
> >>> from rdkit import Chem
> Traceback (most recent call last):
> File "<stdin>", line 1, in <module>
> File
> "/usr/local/Cellar/rdkit/2013.06.1/lib/python2.7/site-packages/rdkit/Chem/__init__.py",
> line 18, in <module>
> from rdkit import rdBase
> ImportError:
> dlopen(/usr/local/Cellar/rdkit/2013.06.1/lib/python2.7/site-packages/rdkit/rdBase.so,
> 2): Symbol not found:
> __ZN5boost6python7objects15function_objectERKNS1_11py_functionERKSt4pairIPKNS0_6detail7keywordES9_E
> Referenced from:
> /usr/local/Cellar/rdkit/2013.06.1/lib/python2.7/site-packages/rdkit/rdBase.so
> Expected in: /usr/local/lib/libboost_python-mt.dylib
> in
> /usr/local/Cellar/rdkit/2013.06.1/lib/python2.7/site-packages/rdkit/rdBase.so
> >>>
>
You'll see that it's using the wrong version of the RDKit. I don't know
exactly how this works in homebrew, but you probably should see if you can
force it to clear out old versions as it's installing the new ones.
-greg
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