CT Sun <ctsun1998 <at> gmail.com> writes: > > > Hi, Greg, it seems the version of boost causes the problem: when I used boost 1.46.1 as you did, rdkit was built successfully. > Thanks. > CT > 2014-3-20 AM10:48于 "CT Sun" <ctsun1998 <at> gmail.com>写道： > > > Hi Greg, > Thanks for your attention. I was using the latest boost 1.55.0 and RDKit 2013_09_2. I would have a try with boost 1.46.1 some later. > CT > > 2014-03-19 13:21 GMT+08:00 Greg Landrum <greg.landrum <at> gmail.com>: > > Hi CT, > > On Wed, Mar 5, 2014 at 8:56 AM, CT Sun <ctsun1998 <at> gmail.com> wrote: > > > > > > > I was building RDKit at my CentOS 6.5 system with the following commands: > cmake -DBOOST_ROOT=/usr/local/lib - DPYTHON_LIBRARY=/usr/lib/python2.7/config/libpython2.7.a - DPYTHON_INCLUDE_DIR=/usr/include/python2.7/ - DPYTHON_EXECUTABLE=/usr/bin/python -DRDK_BUILD_SWIG_WRAPPERS=ON .. > > > > > > I would use the latest SWIG (2.0.12) to implement the java wrapper and have put JUnit.jar to the folder External/java_lib. Then I met this problem: > > > > > > > [ 98%] Swig source > /usr/local/include/boost/smart_ptr/shared_array.hpp:60: Error: Syntax error in input(3). > make[2]: *** [Code/JavaWrappers/gmwrapper/GraphMolJavaJAVA_wrap.cxx] Error 1 > > > > > > make[1]: *** [Code/JavaWrappers/gmwrapper/CMakeFiles/GraphMolWrap.dir/all] Error 2 > make: *** [all] Error 2 > > and the progress was broken. > > > > > > > > Would you please give me any suggestion? > > > > Which version of boost and the RDKit are you using? > I just successfully built the java wrappers with the github rdkit, SWIG v2.012, and boost v1.46.1 > > > > > -greg > > > > > > > > > > > > > -------------------------------------------------------------------------- ---- > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech > > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss <at> lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
Greg, I am also getting same error: [ 97%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatu res.cpp.o [ 98%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFea ture.cpp.o Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so [ 98%] Built target rdChemicalFeatures [ 98%] Swig source /usr/include/boost/smart_ptr/shared_array.hpp:60: Error: Syntax error in input(3). make[2]: *** [Code/JavaWrappers/gmwrapper/GraphMolJavaJAVA_wrap.cxx] Error 1 make[1]: *** [Code/JavaWrappers/gmwrapper/CMakeFiles/GraphMolWrap.dir/all] Error 2 make: *** [all] Error 2 I am using github version of RDKit , SWIG v2.012, and boost v1.46.1 ------------------------------------------------------------------------------ "Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE Instantly run your Selenium tests across 300+ browser/OS combos. Get unparalleled scalability from the best Selenium testing platform available Simple to use. Nothing to install. Get started now for free." http://p.sf.net/sfu/SauceLabs _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
