Hi again,
I wanted to take advantage of the newer DrawingOptions so updated my homebrew
formula to the latest version kindly created by Eddie Cao which works great.
As a result of the libraries update I needed to rebuild the Postgres cartridge
so grabbed the latest build from GitHub.
I’ve been trying to compile this but there’s a hitch:
Undefined symbols for architecture x86_64:
"RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&,
std::__1::vector<std::__1::pair<int, int>,
std::__1::allocator<std::__1::pair<int, int> > >&, bool, bool, bool)",
referenced from:
_molcmp in adapter.o
_MolSubstruct in adapter.o
"RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&,
std::__1::vector<std::__1::vector<std::__1::pair<int, int>,
std::__1::allocator<std::__1::pair<int, int> > >,
std::__1::allocator<std::__1::vector<std::__1::pair<int, int>,
std::__1::allocator<std::__1::pair<int, int> > > > >&, bool, bool, bool,
bool)", referenced from:
_MolSubstructCount in adapter.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
Normally if I see this type of error I assume it’s an issue with the version of
PostgreSQL and it’s libraries but in this instance it appears not to be.
I did some reading and I don’t know if this is an issue:
http://stackoverflow.com/questions/19637164/c-linking-error-after-upgrading-to-mac-os-x-10-9-xcode-5-0-1
I tried this (although wasn’t sure if I placed the flags in the appropriate
section in the makefile). I also tried compiling with the -m32 flag set but was
still unsuccessful.
I don’t know if anyone has experienced anything similar or is aware of a
solution? If this is a known issue I’ll happily revert as it does seem like OSX
upgrades are a bit of a nightmare for compatibility.
Many thanks
Huw Jones
P.S. Thanks for the reply on the Carboranes issue :)------------------------------------------------------------------------------
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