Hi All,
I have found a good workaround for prettier SVG output from rdkit
I changed the DrawingOptions directly in the code :
rdkit.Chem.Draw.MolDrawing.py
# Changed from .3
dblBondOffset= .12
#Changed from 12
atomLabelFontSize= 6
There is probably a more pythonic way to ovveride this without changing the
underlying code in the DrawingOptions class inside
rdkit.Chem.Draw.MolDrawing.py
Thanks
Hari
On Tue, Nov 12, 2013 at 4:41 PM, hari jayaram <[email protected]> wrote:
> Hi ,
> I am using the svg output from the Chem.MolToFile to get svg for all my
> molecules to display to an html page.
>
> This is "working" quite well ..but I find that the drawing looks really
> messy for small rings because the heteroatom labels are too large.
>
> This may be specific to the way my browser ( tested with google-chrome and
> Safari - on iOS and OSX/WIndows/Linux) treats the SVG..but I was wondering
> if anyone knew a way around this- i.e to make the heteoatom labels
> proportional in some way?
>
> Also apologies because this is strictly speaking probably a cairo or an
> html question?
>
> Thanks for your help
>
> Hari
>
>
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