Hi Nick,
On Tue, May 14, 2013 at 12:19 PM, Nicholas Firth
<[email protected]>wrote:
> Hi RDKitters (in particular Hans),
>
> I have an issue with the installation of the RDKit postgres cartridge
> using the brewed version of RDKit. I got an email from Eddie yesterday
> (below) with some instruction from Hans about how to do it. However I'm
> experiencing some problems.
>
> My issue starts at step 2) (it's worth noting that I'm doing this with the
> latest release of RDKit). I started by following the instructions as they
> were but when I got to the make stage I get the error below,
>
> adapter.cpp:32:10: fatal error: 'GraphMol/RDKitBase.h' file not found
> #include <GraphMol/RDKitBase.h>
>
>
> So I then went back and checked a few things and it seems that my $RDBASE
> variable is in a different place to the instructions mine is
> /usr/local/share/RDKit
> I then created the link from the source to this RDBASE and I get the same
> error when I try to make.
>
> This is about where my knowledge of UNIX runs out, so I thought I should
> ask the forum before I end up breaking it all!
>
This is probably pretty straightforward.
The cartridge is built, as you've seen, with a separate makefile - it does
not use the cmake environment that the rest of the rdkit build does.
That makefile uses the value of the environment variable $RDBASE to tell
the compiler where to find the rdkit's header files.
In order to build the cartridge you need to have $RDBASE pointing to the
directory containing the RDKit source distribution
(/usr/local/Cellar/rdkit/2012.03.1 in the example above from Hans). You're
looking for the directory that contains the RDKit's Code directory. You
don't have to change this globally or in your .bashrc file; you can just
set the appropriate value of RDBASE in the shell where you want to build
the cartridge and then try running make.
Hope this helps,
-greg
------------------------------------------------------------------------------
AlienVault Unified Security Management (USM) platform delivers complete
security visibility with the essential security capabilities. Easily and
efficiently configure, manage, and operate all of your security controls
from a single console and one unified framework. Download a free trial.
http://p.sf.net/sfu/alienvault_d2d
_______________________________________________
Rdkit-discuss mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
