Thanks for your reply Yiqun,
I could install the default homebrew non svn version. I will try again with
the fix you suggested to install the SVN head.
Hari
On Sunday, December 16, 2012, Yiqun Cao wrote:
> Hi,
>
> This is a known issue with the formula when you install the SVN version.
> The cause is that there is patch included to get the Q3 release built
> properly with the latest boost. Unfortunately, the patch does not patch
> cleanly on the SVN version. You have two options: either you remove the
> patch manually (run `brew edit rdkit` and then remove anything after line
> 100) or you install the Q3 release instead of the SVN version.
>
> Hope this helps.
>
> Eddie
>
>
> On Dec 16, 2012, at 6:33 PM, hari jayaram
> <[email protected]<javascript:_e({}, 'cvml', '[email protected]');>>
> wrote:
>
> Hi ,
> I am trying to follow the compiling rdkit with boost 1.49 on OSX
> instructions posted by George Papadatos on Oct 10 on the mailing list .
>
> However when I execute the final brew install rdkit step I get an error in
> applying a particular patch. This may be a homebrew error rather than a
> rdkit error ..but I am wondering if anyone knows of a workaround.
> Thanks
> Hari
>
> The detailed error is
>
> haris-macbook:~ hari$ brew install -v --HEAD rdkit --with-inchi
> /usr/bin/env python -c import numpy
> ==> Checking out http://svn.code.sf.net/p/rdkit/code/trunk/
> svn up --force /Library/Caches/Homebrew/rdkit--svn-HEAD
> At revision 2327.
> svn export --force /Library/Caches/Homebrew/rdkit--svn-HEAD
> /private/tmp/rdkit-ak06
> Export complete.
> ==> Patching
> /usr/bin/patch -f -p1 -i 000-homebrew.diff
> patching file CMakeLists.txt
> Hunk #1 succeeded at 146 with fuzz 2 (offset -5 lines).
> patching file Code/GraphMol/CMakeLists.txt
> Hunk #1 FAILED at 5.
> 1 out of 1 hunk FAILED -- saving rejects to file
> Code/GraphMol/CMakeLists.txt.rej
> patching file Code/JavaWrappers/gmwrapper/CMakeLists.txt
> Hunk #1 FAILED at 74.
> 1 out of 1 hunk FAILED -- saving rejects to file
> Code/JavaWrappers/gmwrapper/CMakeLists.txt.rej
> Error: Failure while executing: /usr/bin/patch -f -p1 -i 000-homebrew.diff
>
>
> #############################
> The Instructions I am following are
> #############################
>
>
> From George Papadatos on Oct 10th
> Hello again,
>
> Success at last! I managed to build rdkit using brew and boost 1.49.
> I think the cause of the problem was a strange combination of Mountain
> Lion, boost 1.51 and not up-to-date rdkit svn repo in HomeBrew.
>
> So to summarise:
>
> brew update
> brew uninstall boost
> brew versions boost
> cd /usr/local
> git checkout e40bc41 /usr/local/Library/Formula/boost.rb #version 1.49.0
> cd
>
> brew install boost --build-from-source
>
> brew untap edc/homebrew-rdkit
> brew tap edc/homebrew-rdkit
> brew uninstall rdkit
> brew install --HEAD rdkit
>
> Thanks for all the tips,
>
> George
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