On Sep 7, 2012, at 1:19 PM, Fabian Dey wrote:
> Thanks , the SD file I was talking about was downloaded from the PDB 
> (ligands).

Perhaps email them and let them know that they may have a problem in
their output generation? I don't think there's supposed to be a CL
there. The SD spec says that the atom symbol field is:

  entry in periodic table or L for atom list, A, Q, * for
  unspecified atom, and LP for lone pair, or R# for Rgroup label




                                Andrew
                                [email protected]



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