Felix, On Thu, Aug 30, 2012 at 11:27 AM, Felix Krüger <[email protected]> wrote: > > To get cmake to ignore the systems boost.python and use my own version, > I've installed cmake-2.8.9 and used that to build rdkit, giving the -D > Boost_NO_SYSTEM_PATHS=ON parameter.
sounds good so far. > The output from $ cmake [found the right boost version, found python > libs /my/path/libpython2.6.so.1.0, found python interpreter > /my/path/python, found boost libraries regex + python], $ make and $ > make install looked fine but then for $ ctest I get SEGFAULTS for some > of the python functions (see pasted at the bottom). Can you please do: ldd $RDBASE/rdkit/rdBase.so from within the same shell where you ran ctest and make sure that it's actually finding your python library and the boost libraries you built? The next tests are, from within that shell, to try the following: python -c 'from rdkit import rdBase' python -c 'from rdkit import Chem' The first tests the general boost/python library situation. The second tests the numpy version. -greg ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
