On 2012-05-29 17:45, George Papadatos wrote:
Hi RDKitters,
Today I tried to install the RDKit and cartridge to a brand new Ubuntu
12.04 32-bit running on a Virtual Box.
[...]
Then when I tried to install the extension:
georgep@george-VB:~$ psql -c 'CREATE EXTENSION rdkit' gpdb
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
connection to server was lost
or even:
georgep@george-VB:~/local/rdkit/rdkit_trunk/Code/PgSQL/rdkit$ psql gpdb
psql (9.1.3)
Type "help" for help.
gpdb=# create extension "rdkit";
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
The connection to the server was lost. Attempting reset: Succeeded.
gpdb=# show rdkit.tanimoto_threshold;
ERROR: unrecognized configuration parameter "rdkit.tanimoto_threshold"
Any ideas would be much appreciated!
Hi George,
Sounds exactly like the behavior I described in this thread:
http://sourceforge.net/mailarchive/forum.php?thread_name=CAD4fdRRHdpqDRCWd5AjEzDWJia5WM6zsq%3DosvVmb%3DYHe%3DpmR7A%40mail.gmail.com&forum_name=rdkit-discuss
My issue seemed to be related to the OpenSCG version of PostgreSQL and
for my purposes the issue was solved by using Martin Pitt's postgres
packages instead. However, on one machine, a Linux Mint box, I never got
it working. Are you using all plain vanilla packages from Ubuntu 12.04 ?
Cheers
-- Jan
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