On Thu, Nov 24, 2011 at 11:11 AM, JP <[email protected]> wrote: > Building RDKit 2011.09.1 on CentOs 5.6 (final) - share my pain > (And having seen http://code.google.com/p/rdkit/wiki/BuildingOnCentOS) > > Using python 2.7 which is in /opt which comes with the distribution > (this is the ROCKS, Centos distirbution) (I would not like to rebuild > this -- if possible I would like to use this version out of the box) > > Both > cmake -D PYTHON_LIBRARY=/opt/python/lib/libpython2.7.a -D > PYTHON_INCLUDE_DIR=/opt/python/include/python2.7 -D > CMAKE_C_FLAGS="-fPIC" -D CMAKE_CXX_FLAGS="-fPIC".. > and > cmake -D PYTHON_LIBRARY=/opt/python/lib/libpython2.7.a -D > PYTHON_INCLUDE_DIR=/opt/python/include/python2.7 .. > > from the build dir - fail with the same error (at 4% with) > > [ 4%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o > Linking CXX shared library ../../lib/libRDBoost.so > /usr/bin/ld: /opt/python/lib/libpython2.7.a(exceptions.o): relocation > R_X86_64_32 against `_Py_NoneStruct' can not be used when making a > shared object; recompile with -fPIC
It seems libpython2.7.a was not compiled with -fPIC (that's why you get the same error, compiling rdkit with or witout -fPIC does not affect libpython). I think the easiest solution would be to use the dynamic library libpython2.7.so instead, which I hope is included in the ROCKS distribution. -- Gianluca Sforna http://morefedora.blogspot.com http://identi.ca/giallu - http://twitter.com/giallu ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
