Simon,

On Fri, Sep 30, 2011 at 1:11 PM, Simon Saubern <[email protected]> wrote:
> So the 2.0.0.1088 nodes now generate 636 matches and only 2 false positives:
>

Now that's progress! :-)

> WEHI-0054407    S=C1N(C(=C(C2=C1CN(C(C2)(C)C)C)C#N)N)C
>  [#6](-[#1])(-[#1])-[#7]([#6]:[#6])~[#6][#6]=,:[#6]-[#6]~[#6][#7]
>  dyes5A(27)
> WEHI-0063070    N1C(=NC=C(C1=O)C)NN=Cc2ccc(cc2)N(C)C
>  [#6](-[#1])(-[#1])-[#7](-[#6](-[#1])-[#1])-c:1:c(:c(:c(:c(:c:1-[#1])-[#1])-[#6](-[#1])=[#7]-[#7]-[$([#6](=[#8])-[#6](-[#1])(-[#1])-[#16]-[#6]:[#7]),$([#6](=[#8])-[#6](-[#1])(-[#1])-[!#1]:[!#1]:[#7]),$([#6](=[#8])-[#6]:[#6]-[#8]-[#1]),$([#6]:[#7]),$([#6](-[#1])(-[#1])-[#6](-[#1])-[#8]-[#1])])-[#1])-[#1]
>         hzone_anil_di_alk(35)

I don't think that either of those are false positives; it looks like
there should be a match for each. I guess the differences you see
between cheminformatics systems have to do with aromaticity
definitions.

-greg

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