On Tue, Feb 22, 2011 at 2:26 PM, JP <[email protected]> wrote: > > Hi there: > Setup: > Rdkit: RDKit_2010_12_1 > OS: CentOS release 5.4 (Final) (Linux xxx 2.6.18-164.6.1.el5xen #1 SMP Tue > Nov 3 16:48:13 EST 2009 x86_64 x86_64 x86_64 GNU/Linux) > Boost: 1.42.0 > Python 2.7 > Numpy: Installed using yum install numpy scipy > Output: > -- The C compiler identification is GNU > -- The CXX compiler identification is GNU > -- Check for working C compiler: /usr/bin/gcc > -- Check for working C compiler: /usr/bin/gcc -- works > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - done > -- Check for working CXX compiler: /usr/bin/c++ > -- Check for working CXX compiler: /usr/bin/c++ -- works > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Found PythonLibs: /usr/local/lib/libpython2.7.a > -- Found PythonInterp: /usr/local/bin/python2.7 > -- Boost version: 1.42.0 > -- Found the following Boost libraries: > -- python > -- Found BISON: /usr/bin/bison > -- Found FLEX: /usr/bin/flex > -- Boost version: 1.42.0 > -- Found the following Boost libraries: > -- regex > CMake Error: The following variables are used in this project, but they are > set to NOTFOUND. > Please set them or make sure they are set and tested correctly in the CMake > files: > PYTHON_NUMPY_INCLUDE_PATH
You installed numpy from yum, so it pulled in the system version, which is tied to the system's python; instead, cmake is trying to use your own python 2.7, so you need to add numpy to that one. > Further question - should all the cmake/build commands be run as root? Never ever build stuff as root. -- Gianluca Sforna http://morefedora.blogspot.com http://identi.ca/giallu - http://twitter.com/giallu ------------------------------------------------------------------------------ Free Software Download: Index, Search & Analyze Logs and other IT data in Real-Time with Splunk. Collect, index and harness all the fast moving IT data generated by your applications, servers and devices whether physical, virtual or in the cloud. Deliver compliance at lower cost and gain new business insights. http://p.sf.net/sfu/splunk-dev2dev _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
