Hi
I am trying to build rdkit on my Core duo OSX laptop running Snow Leopard.
I got boost and the newest numpy installed following the instructions posted
here <http://code.google.com/p/rdkit/wiki/BuildingWithCmake>(
http://code.google.com/p/rdkit/wiki/BuildingWithCmake)
However the compile of rdAlignment.cpp.o fails because the
numpy/arrayobject.h is not in the include path.
I can see this file at several locations including
/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/core/include/numpy/arrayobject.h
Just wondering how to make cmake aware of that location ?
Sorry this is strictly not an rdkit issue.
The detailed error msg is posted below
Thanks in advance
Hari
[ 13%] Building CXX object
Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:14:31:
error: numpy/arrayobject.h: No such file or directory
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp: In
function ‘void
RDNumeric::Alignments::GetPointsFromPythonSequence(boost::python::api::object&,
RDGeom::Point3DConstPtrVect&)’:
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:31:
error: ‘PyArray_Check’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:33:
error: ‘PyArrayObject’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:33:
error: ‘ptsMat’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:33:
error: expected type-specifier before ‘PyArrayObject’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:33:
error: expected `>' before ‘PyArrayObject’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:33:
error: expected `(' before ‘PyArrayObject’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:33:
error: expected primary-expression before ‘>’ token
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:33:
error: expected `)' before ‘;’ token
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp: In
function ‘PyObject*
RDNumeric::Alignments::AlignPointPairs(boost::python::api::object,
boost::python::api::object, boost::python::api::object, bool, unsigned
int)’:
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:103:
error: ‘PyArray_Check’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:104:
error: ‘PyArrayObject’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:104:
error: ‘wtsMat’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:104:
error: expected type-specifier before ‘PyArrayObject’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:104:
error: expected `>' before ‘PyArrayObject’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:104:
error: expected `(' before ‘PyArrayObject’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:104:
error: expected primary-expression before ‘>’ token
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:104:
error: expected `)' before ‘;’ token
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:130:
error: ‘npy_intp’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:130:
error: expected `;' before ‘dims’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:131:
error: ‘dims’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:133:
error: ‘PyArrayObject’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:133:
error: ‘res’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:133:
error: expected primary-expression before ‘)’ token
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:133:
error: expected `;' before ‘PyArray_SimpleNew’
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:154:
error: ‘PyArray_Return’ was not declared in this scope
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp: In
function ‘void init_module_rdAlignment()’:
/Users/hari/rdkit/trunk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:162:
error: ‘import_array’ was not declared in this scope
make[2]: ***
[Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o]
Error 1
make[1]: *** [Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/all]
Error 2
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