Hi RDFLib co-devs and users,
There is a hackathon starting to work on ideas regarding COVID-19 data.
https://graph-genome.github.io/
Part of the task will be building a viral pangenome graph.
And associating it with existing data e.g. from UniProt.
https://github.com/pangenome/spodgi
SpOdgi: Is a tool that is supposed to turn any native graph genome
format into a sparql endpoint. Spodgi is based on rdflib for it's
engine.
There is a bunch of open issues in which I could use some help.
Firstly, making it easier to install with docker images etc.
Secondly, the tool is now CLI based and it really needs to have a sparql
endpoint accessible by http.
In any case I could use some help there.
Regards,
Jerven
--
Jerven Tjalling Bolleman
SIB | Swiss Institute of Bioinformatics
CMU - 1, rue Michel Servet - 1211 Geneva 4
t: +41 22 379 58 85 - f: +41 22 379 58 58
[email protected] - http://www.sib.swiss
--
http://github.com/RDFLib
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