"--prefix /usr/local/racket-5.1" (for example) has been working great for my clients and me for years, and I hope that it continues to work in exactly the same way.

Note that originally I started building from source because the distribution ".deb" or ".rpm" build didn't include the CGC binaries on which one of my clients depends. Now that we've been building from source, the "--prefix" has been handy for letting us have multiple versions installed, and for having them follow a consistent naming convention (with less chance for user error in having the correct version number in the pathname, since we're never manually moving the tree around nor manually renaming it).

That said, I think that most people building from source are probably doing it because they're a Racket core developer or they're playing with the latest from Git. Not because they need CGC and also have a highly controlled production environment that is strict about version numbers. So I defer to Eli on what's the best way for most people to install from source.

--
http://www.neilvandyke.org/
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