I am attempting to analyze a number of variables across a relatively large
phylogeny (144 tips) using compar.gee. However, in my dataset I have a
large number of species represented by more than one entry, this is causing
problems with the compar.gee function, as R does not allow duplicate
rownames. Does anyone have experience running this sort of analysis on a
dataset with duplicate species entries that might be able to give me some
ideas for a way around it?
Many thanks,
Skylar
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