r-sig-phylo

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2016/10/29 Re: [R-sig-phylo] Making ultrametric trees Emmanuel Paradis
2016/10/29 Re: [R-sig-phylo] fatal error plotting trees Emmanuel Paradis
2016/10/28 [R-sig-phylo] Making ultrametric trees Shinichi Nakagawa
2016/10/28 Re: [R-sig-phylo] fatal error plotting trees Manabu Sakamoto
2016/10/28 Re: [R-sig-phylo] fatal error plotting trees David Bapst
2016/10/28 [R-sig-phylo] fatal error plotting trees Manabu Sakamoto
2016/10/27 [R-sig-phylo] New User Sami Hussein Rabei
2016/10/27 Re: [R-sig-phylo] Adding a custom legend underneath a phylo plot with coloured tips Liam J. Revell
2016/10/27 [R-sig-phylo] Adding a custom legend underneath a phylo plot with coloured tips Gabriel Yedid
2016/10/27 [R-sig-phylo] ‏‏رد: Truncate x-axis in phydataplot barplots Sami Hussein Rabei
2016/10/27 Re: [R-sig-phylo] Draw multiple ASR pies on nodes Liam J. Revell
2016/10/27 [R-sig-phylo] Course Phylogenetic Analysis using R, March 6-10, Barcelona (Spain). Soledad De Esteban-Trivigno
2016/10/27 [R-sig-phylo] Draw multiple ASR pies on nodes Charles Pouchon
2016/10/26 [R-sig-phylo] Maximize Mean Pairwise Distance (Leonardo R? Jorge) Sh Esmaielbegi
2016/10/25 [R-sig-phylo] Maximize Mean Pairwise Distance Leonardo Ré Jorge
2016/10/17 Re: [R-sig-phylo] Truncate x-axis in phydataplot barplots Liam J. Revell
2016/10/17 Re: [R-sig-phylo] Truncate x-axis in phydataplot barplots Emmanuel Paradis
2016/10/17 Re: [R-sig-phylo] Truncate x-axis in phydataplot barplots Liam Revell
2016/10/17 [R-sig-phylo] Truncate x-axis in phydataplot barplots Marian Schubert
2016/10/06 Re: [R-sig-phylo] Supertree with Stratigraphic Constraints David Bapst
2016/10/06 Re: [R-sig-phylo] Supertree with Stratigraphic Constraints William Gearty
2016/10/05 Re: [R-sig-phylo] Supertree with Stratigraphic Constraints David Bapst
2016/10/05 Re: [R-sig-phylo] Supertree with Stratigraphic Constraints William Gearty
2016/10/05 [R-sig-phylo] predicting computational needs of a MuSSE analysis? Elizabeth Miller
2016/10/04 Re: [R-sig-phylo] ape functions to become generic David Bapst
2016/10/04 [R-sig-phylo] 'FINAL CALL - Phylogentic data analysis using R' Oliver Hooker
2016/10/04 Re: [R-sig-phylo] ape functions to become generic Emmanuel Paradis
2016/10/03 Re: [R-sig-phylo] ape functions to become generic David Bapst
2016/10/03 [R-sig-phylo] ape functions to become generic Emmanuel Paradis
2016/09/29 [R-sig-phylo] accounting for unknown tip states in ancestral rescontructions using phytools and bayestraits Jesse Delia
2016/09/29 [R-sig-phylo] Error in dis[sppInSample, sppInSample] : subscript out of bounds Jhonny Capichoni Massante
2016/09/26 Re: [R-sig-phylo] evolve discrete characters on non-ultrametric tree? Liam J. Revell
2016/09/26 [R-sig-phylo] evolve discrete characters on non-ultrametric tree? John Denton
2016/09/26 Re: [R-sig-phylo] phylogenetic signal-Blomberg's K Liam J. Revell
2016/09/26 [R-sig-phylo] phylogenetic signal-Blomberg's K Menzel, Dr. Florian
2016/09/25 Re: [R-sig-phylo] How to contribute? Richel Bilderbeek
2016/09/22 [R-sig-phylo] Phylogenetic signal Sergio Ferreira Cardoso
2016/09/18 Re: [R-sig-phylo] Use of a Phylocom tree for PGLS Oscar Valverde
2016/09/18 Re: [R-sig-phylo] Use of a Phylocom tree for PGLS Brian O'Meara
2016/09/17 Re: [R-sig-phylo] Use of a Phylocom tree for PGLS Jacob Berv
2016/09/17 Re: [R-sig-phylo] simmap correlation statistics in R? Liam J. Revell
2016/09/17 Re: [R-sig-phylo] Use of a Phylocom tree for PGLS Liam J. Revell
2016/09/17 Re: [R-sig-phylo] Use of a Phylocom tree for PGLS Liam J. Revell
2016/09/17 [R-sig-phylo] Use of a Phylocom tree for PGLS Oscar Valverde
2016/09/17 [R-sig-phylo] simmap correlation statistics in R? Maria Ghazali
2016/09/17 Re: [R-sig-phylo] mulRF distance Liam J. Revell
2016/09/17 [R-sig-phylo] mulRF distance Ondřej Mikula
2016/09/16 Re: [R-sig-phylo] Standard errors of theta estimates in OU models Xiaojing Wei
2016/09/15 Re: [R-sig-phylo] Standard errors of theta estimates in OU models Cecile Ane
2016/09/15 Re: [R-sig-phylo] Standard errors of theta estimates in OU models Brian O'Meara
2016/09/15 [R-sig-phylo] Standard errors of theta estimates in OU models Xiaojing Wei
2016/09/15 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position branchlizard .
2016/09/15 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position branchlizard .
2016/09/15 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position Liam J. Revell
2016/09/14 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position Florian Boucher
2016/09/14 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position branchlizard .
2016/09/14 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position Florian Boucher
2016/09/14 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position branchlizard .
2016/09/12 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position Liam J. Revell
2016/09/12 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position branchlizard .
2016/09/12 Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position Hilmar Lapp
2016/09/12 [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position branchlizard .
2016/09/12 Re: [R-sig-phylo] plot.cophylo: how to change the colour of host-parasite associations Juan Antonio Balbuena
2016/09/12 Re: [R-sig-phylo] plot.cophylo: how to change the colour of host-parasite associations Liam J. Revell
2016/09/12 [R-sig-phylo] plot.cophylo: how to change the colour of host-parasite associations Juan Antonio Balbuena
2016/09/12 [R-sig-phylo] Course Phylogenetic Analysis using R, March 6-10, Barcelona (Spain). Soledad De Esteban-Trivigno
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Bhuller, Ravneet
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Liam Revell
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Klaus Schliep
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Bhuller, Ravneet
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Martin Dohrmann
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Bhuller, Ravneet
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Thibaut Jombart
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Liam J. Revell
2016/09/12 Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Joseph W. Brown
2016/09/12 [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments? Bhuller, Ravneet
2016/09/11 Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values Liam J. Revell
2016/09/10 Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values Lei Yang
2016/09/10 Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values Liam J. Revell
2016/09/10 [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values Lei Yang
2016/09/09 Re: [R-sig-phylo] ape - nj, mvr questions Emmanuel Paradis
2016/09/07 Re: [R-sig-phylo] Missing States in ML Reconstruction of Discrete Ancestral States (phytools, ape) Eduardo Ascarrunz
2016/09/06 [R-sig-phylo] ape - nj, mvr questions Shai Tal
2016/09/05 Re: [R-sig-phylo] suset DNAbin Emmanuel Paradis
2016/09/05 Re: [R-sig-phylo] suset DNAbin dga...@huskers.unl.edu
2016/09/05 Re: [R-sig-phylo] ape: chronos Emmanuel Paradis
2016/09/05 Re: [R-sig-phylo] subset DNAbin Liam J. Revell
2016/09/05 [R-sig-phylo] ape: chronos Daniel Lang
2016/09/04 Re: [R-sig-phylo] subset DNAbin Andreas Kolter
2016/09/04 [R-sig-phylo] suset DNAbin Kirston Barton
2016/09/01 Re: [R-sig-phylo] Query about Phylogenetics in R Liam J. Revell
2016/09/01 Re: [R-sig-phylo] Query about Phylogenetics in R Vojtěch Zeisek
2016/09/01 Re: [R-sig-phylo] Query about Phylogenetics in R Bhuller, Ravneet
2016/08/31 Re: [R-sig-phylo] Query about Phylogenetics in R Bhuller, Ravneet
2016/08/31 Re: [R-sig-phylo] Query about Phylogenetics in R Liam J. Revell
2016/08/31 Re: [R-sig-phylo] Query about Phylogenetics in R Brian O'Meara
2016/08/31 Re: [R-sig-phylo] Query about Phylogenetics in R Vojtěch Zeisek
2016/08/31 [R-sig-phylo] Query about Phylogenetics in R Bhuller, Ravneet
2016/08/29 Re: [R-sig-phylo] How to contribute? Emmanuel Paradis
2016/08/19 Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Liam J. Revell
2016/08/19 Re: [R-sig-phylo] Ultrametric tree not recognized Klaus Schliep
2016/08/19 Re: [R-sig-phylo] Ultrametric tree not recognized Emmanuel Paradis
2016/08/18 [R-sig-phylo] Is there a way to “layer” multiple distance matrices onto a single PCoA plot? Shirley Lang
2016/08/18 [R-sig-phylo] Gathering richness information for Medusa Massana, Kathryn
2016/08/18 Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Rafael S. Marcondes
2016/08/18 [R-sig-phylo] ggtree paper published Yu, Guangchuang
2016/08/17 Re: [R-sig-phylo] Ultrametric tree not recognized Klaus Schliep
2016/08/17 Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Rafael S. Marcondes
2016/08/17 Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Brian O'Meara
2016/08/17 Re: [R-sig-phylo] Ultrametric tree not recognized Emmanuel Paradis
2016/08/16 Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Liam J. Revell
2016/08/16 Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Santiago Claramunt
2016/08/16 Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Liam J. Revell
2016/08/16 [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie) Rafael S. Marcondes
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Joseph W. Brown
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Klaus Schliep
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Martin Dohrmann
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Joseph W. Brown
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Klaus Schliep
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Martin Dohrmann
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Joseph W. Brown
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Martin Dohrmann
2016/08/16 Re: [R-sig-phylo] Ultrametric tree not recognized Liam J. Revell
2016/08/16 [R-sig-phylo] Ultrametric tree not recognized Martin Dohrmann
2016/08/16 [R-sig-phylo] How to contribute? Richel Bilderbeek
2016/08/12 [R-sig-phylo] BAMM / BAMMtools reliability Dan Rabosky
2016/08/11 Re: [R-sig-phylo] Unable to reorder any phylo object with reorder.phylo Zach Culumber
2016/08/11 Re: [R-sig-phylo] Unable to reorder any phylo object with reorder.phylo Liam Revell
2016/08/11 [R-sig-phylo] Unable to reorder any phylo object with reorder.phylo Zach Culumber
2016/08/09 [R-sig-phylo] Na/Nan/Inf error related to alpha value using corMartins in PGLS Church, Samuel
2016/08/04 [R-sig-phylo] 'Phylogenetic data analysis using R - STATS COURSE' Oliver Hooker
2016/08/03 [R-sig-phylo] model assumptions and optimizing lambda when running Pgls across a block of trees Jesse Delia
2016/08/03 Re: [R-sig-phylo] statistical tests for phylogenetic independent contrasts Joe Felsenstein
2016/08/03 Re: [R-sig-phylo] statistical tests for phylogenetic independent contrasts Manabu Sakamoto
2016/08/03 [R-sig-phylo] statistical tests for phylogenetic independent contrasts Vivek
2016/08/03 [R-sig-phylo] failure of mvrs (tree construction based on the minimum variance reduction) - workaround? Oliver Ratmann
2016/07/20 Re: [R-sig-phylo] extracting from mrbayes David Bapst
2016/07/19 [R-sig-phylo] extracting from mrbayes John Denton
2016/07/11 [R-sig-phylo] When we say a trait is phylogenetically labile Chen, Ting-Wen
2016/07/11 [R-sig-phylo] Nantucket phylogeny developeR bootcamp Liam J. Revell
2016/07/10 Re: [R-sig-phylo] data anlysis Theodore Garland Jr
2016/07/10 [R-sig-phylo] data anlysis Rodrigo Gavira
2016/07/07 Re: [R-sig-phylo] suppress axes in phenogram() Jacob Berv
2016/07/07 Re: [R-sig-phylo] suppress axes in phenogram() GRAHAM JAMES SLATER
2016/07/07 Re: [R-sig-phylo] suppress axes in phenogram() Jacob Berv
2016/07/07 Re: [R-sig-phylo] suppress axes in phenogram() Jacob Berv
2016/07/07 Re: [R-sig-phylo] suppress axes in phenogram() Liam J. Revell
2016/07/07 [R-sig-phylo] suppress axes in phenogram() Jacob Berv
2016/07/07 Re: [R-sig-phylo] 'T151: New Approaches to Phylogenetic Paleobiology' at GSA Annual Meeting 2016. Sept 25-28 in Denver David Bapst
2016/07/07 Re: [R-sig-phylo] Chronos function in ape Emmanuel Paradis
2016/07/06 Re: [R-sig-phylo] Chronos function in ape Brian O'Meara
2016/07/06 [R-sig-phylo] Chronos function in ape Marco Fracassetti
2016/07/06 Re: [R-sig-phylo] Bug report for CDF.birth.death.R Emmanuel Paradis
2016/07/05 Re: [R-sig-phylo] Reconstruction of ancestral character state with no organ Wu, Cheng-Chiang
2016/07/05 [R-sig-phylo] Bug report for CDF.birth.death.R Niko Yasui
2016/07/04 Re: [R-sig-phylo] get divergence date for all tips on a chronogram Emmanuel Paradis
2016/07/04 [R-sig-phylo] get divergence date for all tips on a chronogram Chris Buddenhagen
2016/07/03 Re: [R-sig-phylo] Reconstruction of ancestral character state with no organ Liam J. Revell
2016/07/01 Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo Kamila Naxerova
2016/07/01 [R-sig-phylo] Reconstruction of ancestral character state with no organ Wu, Cheng-Chiang
2016/07/01 Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo Emmanuel Paradis
2016/07/01 Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo Emmanuel Paradis
2016/06/30 Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo Kamila Naxerova
2016/06/29 Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo Liam J. Revell
2016/06/29 [R-sig-phylo] Adjust position of tip labels in plot.phylo Kamila Naxerova
2016/06/29 Re: [R-sig-phylo] chronos ape package does it return confidence intervals too? Emmanuel Paradis
2016/06/28 [R-sig-phylo] chronos ape package does it return confidence intervals too? Chris Buddenhagen
2016/06/19 [R-sig-phylo] Nantucket phylogeny developeR bootcamp Klaus Schliep
2016/06/18 Re: [R-sig-phylo] root in mvOU Julien Clavel
2016/06/14 Re: [R-sig-phylo] Error in plotBS when number of taxa is small Klaus Schliep
2016/06/14 [R-sig-phylo] Error in plotBS when number of taxa is small Kamila Naxerova
2016/06/14 Re: [R-sig-phylo] Pagel 94 Baysian Version 3 states? Manabu Sakamoto
2016/06/14 Re: [R-sig-phylo] Pagel 94 Baysian Version 3 states? mailbox Franz
2016/06/14 Re: [R-sig-phylo] Pagel 94 Baysian Version 3 states? Manabu Sakamoto
2016/06/14 [R-sig-phylo] Pagel 94 Baysian Version 3 states? mailbox Franz
2016/06/07 Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Vojtěch Zeisek
2016/06/07 Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Hilmar Lapp
2016/06/07 Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Vojtěch Zeisek
2016/06/07 Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Hilmar Lapp
2016/06/05 [R-sig-phylo] multi-regime OU models and PGLS saurabh
2016/06/03 [R-sig-phylo] genetic data analysis in R short course, Glasgow 16-20 Aug 2016 Thibaut Jombart
2016/05/30 Re: [R-sig-phylo] identify duplicate topologies and add corresponding values Liam J. Revell
2016/05/30 Re: [R-sig-phylo] identify duplicate topologies and add corresponding values Emmanuel Paradis
2016/05/30 Re: [R-sig-phylo] identify duplicate topologies and add corresponding values Liam J. Revell
2016/05/30 [R-sig-phylo] identify duplicate topologies and add corresponding values John Denton
2016/05/29 [R-sig-phylo] Simulating datasets under models with very low rates Michael Foisy
2016/05/25 Re: [R-sig-phylo] root tree in ape 3.4 vs 3.2 Emmanuel Paradis
2016/05/25 [R-sig-phylo] root tree in ape 3.4 vs 3.2 Tomas Fer
2016/05/24 Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds Emmanuel Paradis
2016/05/24 [R-sig-phylo] Problem with drop.clade/drop.tip function? Gopal Murali
2016/05/23 Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds Sergio Ferreira Cardoso
2016/05/23 Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds Emmanuel Paradis
2016/05/23 Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds Liam J. Revell
2016/05/23 [R-sig-phylo] Error in trees[[i]] : subscript out of bounds Sergio Ferreira Cardoso
2016/05/19 Re: [R-sig-phylo] Using bind.tree on simmaps Liam J. Revell
2016/05/18 [R-sig-phylo] Using bind.tree on simmaps Christie Ziegler
2016/05/13 [R-sig-phylo] Unequal line widths for branches when sent to pdf in R Chris Buddenhagen
2016/05/13 Re: [R-sig-phylo] Associated r created graphs or external images with specific nodes on a phylogeny Andreas Kolter
2016/05/11 Re: [R-sig-phylo] Associated r created graphs or external images with specific nodes on a phylogeny Liam J. Revell
2016/05/11 [R-sig-phylo] Associated r created graphs or external images with specific nodes on a phylogeny Chris Buddenhagen