Remove the directory where xcrun says it is supposed to live and re-install the
command line tools?
el
—
Sent from Dr Lisse’s iPhone
On 14 Feb 2021, 01:41 +0200, Richard M. Heiberger <r...@temple.edu>, wrote:
> I reported on installing xcode tools in my email
> Sat 2/13/2021 3:59 PM
> It didn't help.
>
> I did all this R_4.0.4 RC testing after updating to Big Sur 11.2.1.
>
> ________________________________________
> From: Dr Eberhard W Lisse <e...@lisse.na>
> Sent: Saturday, February 13, 2021 4:44 PM
> To: Duncan Murdoch; R-SIG-Mac; Richard M. Heiberger
> Cc: e...@lisse.na
> Subject: [External] Re: [R-SIG-Mac] [External] Re: [External] Re: [External]
> Please test R 4.0.4 RC
>
> the Xcode Command line tools are missing. Install them and see what happens.
>
> Did you recently upgrade MacOS?
>
> el
>
> —
> Sent from Dr Lisse’s iPhone
> On 13 Feb 2021, 23:21 +0200, Richard M. Heiberger <r...@temple.edu>, wrote:
> That is next. Again a fresh session.
>
>
> setwd('/Users/rmh/Rwd/')
> Sys.setenv(DISPLAY=":0.0")
> X11()
> xcrun: error: invalid active developer path
> (/Library/Developer/CommandLineTools), missing xcrun at:
> /Library/Developer/CommandLineTools/usr/bin/xcrun
> Error in .External2(C_X11, d$display, d$width, d$height, d$pointsize, :
> unable to start device X11
> In addition: Warning messages:
> 1: In system2("otool", c("-L", shQuote(DSO)), stdout = TRUE) :
> running command ''otool' -L
> '/Library/Frameworks/R.framework/Resources/modules/R_X11.so'' had status 1
> 2: In X11() : unable to open connection to X11 display ''
>
>
>
> and the R session is still alive.
>
>
> This rasies for me a different question. Why should I want X11()?
>
> When X11 was working it was very slow, and didn't allow paging back through
> previous images.
>
> In favor of X11, I think it uses the display space better. X11() has better
> size and spacing for xlab, ylab, and main than quartz(). But that isn't a
> strong enough
> reason to use it while develkoping a graph. When I want it to look good,
> I go directly to pdf() and get the spacing that I think looks better.
>
> ________________________________________
> From: Duncan Murdoch <murdoch.dun...@gmail.com>
> Sent: Saturday, February 13, 2021 4:05 PM
> To: Richard M. Heiberger; R-SIG-Mac
> Subject: [External] Re: [R-SIG-Mac] [External] Re: [External] Please test R
> 4.0.4 RC
>
> Have you tried the change to DISPLAY, i.e.
>
> Sys.setenv(DISPLAY=":0.0")
>
> before running X11()?
>
> Duncan Murdoch
>
> On 13/02/2021 3:50 p.m., Richard M. Heiberger wrote:
> I tried this. It made no difference. Both before and after running
> sudo xcode-select —install
> I ran (in both cases, in a brand new *R* sessio n)
>
> X11()
> xcrun: error: invalid active developer path
> (/Library/Developer/CommandLineTools), missing xcrun at:
> /Library/Developer/CommandLineTools/usr/bin/xcrun
>
>
> My prior was that the xcode call was irrelevant is that X11() using XQuart
> 8.0.3beta
> worked with intel R_4.0.3 on the Mac M1.
>
> ________________________________________
> From: Dr Eberhard W Lisse <e...@lisse.na>
> Sent: Saturday, February 13, 2021 3:33 AM
> To: Simon Urbanek; R-SIG-Mac; Richard M. Heiberger
> Cc: e...@lisse.na
> Subject: [External] Re: [R-SIG-Mac] [External] Please test R 4.0.4 RC
>
> that has nothing to do with Xquartz but means you need to install the Command
> line tools
>
> sudo xcode-select —install
>
> —
> Sent from Dr Lisse’s iPhone
> On 13 Feb 2021, 06:13 +0200, Richard M. Heiberger <r...@temple.edu>, wrote:
> Using the intel R_4.0.4RC on the Mac M1.
>
> Based on your recommendation I reinstalled XQuartz 2.7.11 instead of the
> 8.0.3beta.
> X11() now does not work at all.
>
> X11()
> xcrun: error: invalid active developer path
> (/Library/Developer/CommandLineTools), missing xcrun at:
> /Library/Developer/CommandLineTools/usr/bin/xcrun
> C-c C-c C-c C-c
>
> Force-Killing XQuartz from the Activity Monitor doesn't help.
> I have to Force-kill the R process.
>
> ________________________________________
> From: R-SIG-Mac <r-sig-mac-boun...@r-project.org> on behalf of Simon Urbanek
> <simon.urba...@r-project.org>
> Sent: Friday, February 12, 2021 6:50 PM
> To: R-SIG-Mac
> Subject: [External] [R-SIG-Mac] Please test R 4.0.4 RC
>
> Dear macOS useRs,
>
> please test the latest R 4.0.4 RC builds from
>
> https://mac.r-project.org/
>
> especially if you are running macOS Big Sur. The known issues introduced by
> Big Sur have been fixed, but I cannot replicate nor test the spurious
> touchbar warning.
>
> Also a reminder to *not* install XQuartz betas even if XQuartz ask you to -
> they are betas for a reason (=unstable) and break things.
>
> Cheers,
> Simon
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> _______________________________________________
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>
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