For me, it worked as follows

sudo rm -rf /Library/Developer/CommandLineTools
sudo xcode-select —install

Best 
Gilberto


> On 2 Dec 2020, at 15:15, Spencer Graves <spencer.gra...@prodsyse.com> wrote:
> 
>         What should I do to "make sure to have installed the latest version 
> of Apple's development environment, including version 12.0 of the compiler"?
> 
> 
>         Thanks,
>         Spencer Graves
> 
> 
> On 2020-12-02 07:36, GilbertoCamara wrote:
>> Dear all,
>> I am running R 4.0.3 on BigSur without major performance issues. I am using 
>> RStudio instead of the R GUI.
>> I had to build all spatial packages (rgdal, sf, terra and raster) from 
>> source using the Apple clang version 12.0.0 compiler. I also had to build 
>> GDAL from scratch, since neither the “homebrew” version nor the “kyngchaos” 
>> version work well with BigSur.
>> If anyone is building packages from source, please make sure to have 
>> installed the latest version of Apple’s development environment, including 
>> version 12.0 of the compiler as earlier versions do not work well in BigSur.
>> Best
>> Gilberto
>> ===========================
>> Prof Dr Gilberto Camara
>> Secretariat Director
>> GEO - Group on Earth Observations
>>> On 2 Dec 2020, at 14:15, Bob Rudis <b...@rud.is> wrote:
>>> 
>>> After a bit of git and google poking it seems this is happening to users
>>> of MacVim (https://github.com/macvim-dev/macvim/issues/1114) and a few
>>> other FOSS projects.
>>> 
>>> In various GH issues (like that one) the issue claims to be resolved by
>>> using the latest Xcode & SDK but that’s not likely to be a solution for R
>>> GUI (which I’m assuming you're using and where this error is coming up).
>>> 
>>> Some of the threads I saw made it seem like it was happening especially on
>>> Touch Bar-equipped MacBook Pros (but that’s not confirmed).
>>> 
>>> When I try R GUI on Big Sur (on the new M1 Mini) — either just plain R
>>> scripts or plotting — I do not see this, nor do I see this on my Intel
>>> MacBook Pro (both are on the latest Big Sur beta and R 4.0.3).
>>> 
>>> On Dec 2, 2020 at 7:53:26 AM, Spencer Graves <spencer.gra...@prodsyse.com>
>>> wrote:
>>> 
>>>> I didn't get this with R 4.0.3 under macOS Big Sur 11.0.1 with "time
>>>> R CMD build" / check.  I have not tried it under RStudio.
>>>> 
>>>> 
>>>> sg
>>>> 
>>>> 
>>>> On 2020-12-02 05:01, Dr Eberhard W Lisse wrote:
>>>> 
>>>> I don't get this in 4.0.3 (using the command line version of R) and I
>>>> 
>>>> don't get this in RStudio 1.3.1093 either.  I use the homebrew versions
>>>> 
>>>> without the R GUI even installed.
>>>> 
>>>> 
>>>> I am sure more detail will be helpful to the developers.
>>>> 
>>>> 
>>>> el
>>>> 
>>>> 
>>>> On 02/12/2020 11:09, Maria-Angeles Casares-de-Cal via R-SIG-Mac wrote:
>>>> 
>>>>> To those in charge of R for Mac OS X:
>>>> 
>>>>> 
>>>> 
>>>>> I have installed the new Big Sur operating system and now I always get
>>>> 
>>>>> a warning similar to:
>>>> 
>>>>> 
>>>> 
>>>>> 2020-12-02 09:52:00.647 R[703:11786] Warning: Expected min height of
>>>> 
>>>>> view: (<NSPopoverTouchBarItemButton: 0x7f9c6bb3df50>) to be less than
>>>> 
>>>>> or equal to 30 but got a height of 32.000000.  This error will be
>>>> 
>>>>> logged once per view in violation.
>>>> 
>>>>> 
>>>> 
>>>>> and the computer becomes very slow.
>>>> 
>>>>> 
>>>> 
>>>>> Can I do something to fix it, or will we have to wait for an R update?
>>>> 
>>>>> 
>>>> 
>>>>> Thank you very much for your attention.
>>>> 
>>>>> 
>>>> 
>>>>> Sincerely,
>>>> 
>>>>> 
>>>> 
>>>>> María-Ángeles Casares-de-Cal
>>>> 
>>>> [...]
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac@r-project.org
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>> 
>>> 
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>>> 
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>> 
> 
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