JJB, FWIW if you have an issue that is related to macOS R please report it here. GH is fine for PRs, but I am only batch-processing GH notifications once in a while (with close to 100 repos it's not possible to do it continuously), so I only act on things flagged here as important.
Cheers, Simon > On Nov 20, 2020, at 3:34 AM, Balamuta, James Joseph <balam...@illinois.edu> > wrote: > > Prof. Ripley, > > Hope all is well. > > The issue was raised by Jeroen on GitHub on Oct 30th regarding libpq.5.dylib > being missing: > > https://github.com/R-macos/recipes/issues/14 > > To date, Simon hasn't responded to it. Not sure re-building with the recipe > as-is will yield the correct outcome as the pgsql is at: /usr/local/pgsql/lib > instead of /usr/local/{include,lib}. > > Best, > > JJB > > On 11/19/20, 7:46 AM, "R-SIG-Mac on behalf of Gilberto Camara" > <r-sig-mac-boun...@r-project.org on behalf of gcam...@geosec.org> wrote: > > Dear Prof Ripley > > There have been reports as follows: > > https://community.rstudio.com/t/rgdal-library-not-loading/88025 > <https://community.rstudio.com/t/rgdal-library-not-loading/88025> > > https://github.com/r-spatial/sf/issues/1542 > <https://github.com/r-spatial/sf/issues/1542> > > Best > Gilberto > =========================== > Prof Dr Gilberto Camara > Secretariat Director > GEO - Group on Earth Observations > 7 bis, Avenue de La Paix > CH-1211 Geneva - Switzerland > Tel: +41227308480 > Web: www.earthobservations.org > > >> On 19 Nov 2020, at 14:43, Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote: >> >> On 19/11/2020 11:22, GilbertoCamara wrote: >>> Dear all, >>> Mac users that have upgraded to Mac OS 11 BigSur have reported having >>> problems with “rgdal” and “sf”. The same happened to me when I upgraded my >>> Mac. >> >> What problems are those? You report nothing, and make reference to no >> reports here nor on R-sig-geo. >> >> I tried the binary package of sf on my Intel 'Big Sur' machine and got >> >>> library(sf) >> Error: package or namespace load failed for ‘sf’ in dyn.load(file, DLLpath = >> DLLpath, ...): >> unable to load shared object '/Users/ripley/R/Library/sf/libs/sf.so': >> dlopen(/Users/ripley/R/Library/sf/libs/sf.so, 6): Library not loaded: >> /usr/lib/libpq.5.dylib >> Referenced from: /Users/ripley/R/Library/sf/libs/sf.so >> Reason: image not found >> >> so it seem Apple has removed the PostgreSQL library. >> >>> I managed to get "sf" to run on MacOS 11.0.1 by recompiling most of the >>> required packages. Here's the recipe: >>> 1. Remove all spatial software from brew (if you installed it). Rgdal does >>> not like "brewed" stuff (I believe Roger prefers wine). Seriously, it >>> appears that rgdal looks for libraries in their default places and not in >>> the "Cellar" libraries used by "brew". >>> 2. Install Xcode 12.3beta (downloaded from Apple Developers). This is the >>> latest version of XCode which is compatible with MacOS BigSur. >>> 3. Install "wget" using brew: >>> "brew install wget". >>> 4. Download the libraries below from their sources: >>> (a) sqlite-autoconf-3330000.tar.gz from >>> "https://www.sqlite.org/download.html >>> <https://www.sqlite.org/download.html>". >>> (b) tiff-4.1.0.tar.gz from "https://download.osgeo.org/libtiff/ >>> <https://download.osgeo.org/libtiff/>" >>> (c) proj-7.2.0.tar.gz from "https://proj.org/download.html#current-release >>> <https://proj.org/download.html#current-release>" >>> (d) libgeotiff-1.6.0.tar.gz from >>> "https://download.osgeo.org/geotiff/libgeotiff/ >>> <https://download.osgeo.org/geotiff/libgeotiff/>" >>> (e) geos-3.8.1.tar.bz2 from "https://trac.osgeo.org/geos >>> <https://trac.osgeo.org/geos>" >>> (f) gdal-3.2.0.tar.gz from "https://gdal.org/download.html >>> <https://gdal.org/download.html>" >> >> At the bottom of https://mac.r-project.org/libs-4/ >> <https://mac.r-project.org/libs-4/> you will see a reference to 'recipes': >> you could simply have followed those to rebuild for macOS 11, probably only >> gdal. You probably want to ensure that the libpq that libgdal links against >> is the one in the libpq recipe (or build without PostgreSQL support). >> Please ask Simon to rebuild his gdal accordingly. >> >>> 5. In the order given above, unpack each library and then execute the >>> following commands: >>> % ./configure >>> % make >>> % sudo make install >>> 6. Now you are ready to compile "rgdal" and "sf" from source. Using the R >>> console,do: >>>> install.packages("rgdal", type = "source”) >>>> install.packages("sf", type = "source") >>> >>> 7. After those steps, both "rgdal" and "sf" are working on MacOS BigSur. >>> Hope this helps Mac users. >>> Best >>> Gilberto >>> [[alternative HTML version deleted]] >> >> Please don't send HTML. >> >> -- >> Brian D. Ripley, rip...@stats.ox.ac.uk >> <mailto:rip...@stats.ox.ac.uk> >> Emeritus Professor of Applied Statistics, University of Oxford > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
