clang7 seems to be unnecessary for current R. It isn’t in my system and from memory was one of the things I removed to get everything working. This involved removing the clang and fortran that had been previously installed. I may have needed some other things but my systems will build your package.
Ken > On 14 Oct 2020, at 10:01 pm, Koenker, Roger W <rkoen...@illinois.edu> wrote: > > Simon, > > Thanks, I still have the same error: > > In file included from mcmb.c:11: > /usr/local/clang7/include/c++/v1/stdio.h:108:15: fatal error: 'stdio.h' file > not found > #include_next <stdio.h> > > I didn’t do anything beyond upgrading R and installing fortran 8.2.0, and the > CLT 12.2. > but I didn’t remove anything, should I have? I now see: > > yzzy: which clang > /usr/bin/clang > yzzy: clang --version > Apple clang version 12.0.0 (clang-1200.0.32.2) > Target: x86_64-apple-darwin19.6.0 > Thread model: posix > InstalledDir: > /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin > > > The last time I faced this sort of thing James suggested this: > https://groups.google.com/g/r-sig-mac/c/rZeYeiyyxtY > > but the names and locations are somewhat different now, so I’m reluctant to > experiment. > > Roger > > > >> On Oct 14, 2020, at 11:48 AM, Simon Urbanek <simon.urba...@r-project.org> >> wrote: >> >> Roger, >> >> the error points to an old local clang - did you remove (or move aside) that >> one? Check your /usr/local - you seem to have some old stuff there that is >> breaking. That would solve the original issue. You seem to have done a lot >> after that error, but didn't tell us what happened then… you can't have the >> same error if you removed it ;) >> >> Cheers, >> Simon >> >> >> >> >>> On Oct 14, 2020, at 10:28 PM, Koenker, Roger W <rkoen...@illinois.edu> >>> wrote: >>> >>> I’ve recently “upgraded” to catalina, and compilation of my quantreg >>> package failed with: >>> >>> In file included from mcmb.c:11: >>> /usr/local/clang7/include/c++/v1/stdio.h:108:15: fatal error: 'stdio.h' >>> file not found >>> #include_next <stdio.h> >>> >>> So I’ve tried the following: >>> >>> 1. Upgraded R to 4.0.3 >>> 2. Upgraded the fortran compiler to 8.2.0 as suggested. >>> 3. Attempted to reinstall command line tools with Xcode-select >>> —install. This fails with >>> a popup that says: >>> >>> Can’t install the software because it is not currently >>> available from the Software Update server. >>> 4. Tried again to reinstall Command line tools 12.2 beta 3 from >>> https://developer.apple.com/download/more/ >>> which successfully installed, but my stdio.h error persisted. >>> 5. Following thread: >>> http://r-sig-mac.29524.n8.nabble.com/R-SIG-Mac-fatal-error-stdio-h-file-not-found-td889.html >>> I looked at: >>> >>> yzzy: which clang /usr/bin/clang >>> yzzy: xcode-select -p >>> /Applications/Xcode.app/Contents/Developer >>> yzzy: xcrun --show-sdk-path >>> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk >>> >>> but that didn’t speak to me so further googling led me to: >>> >>> https://stackoverflow.com/questions/54557659/r-cant-update-packages-clang-cant-find-head-files >>> so lurking in: >>> /Library/Developer/CommandLineTools/usr/include/c++/v1 >>> is stdio.h, but I’m feeling a bit queasy at this point and >>> would appreciate some expert advice. >>> >>> Roger >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
