Works fine in both RStudio and in the terminal for me (10.15.6).
R 4.0.2, official binary On 3 Aug 2020, at 15:21, Marc Schwartz via R-SIG-Mac wrote:
Hi,Just installed rgl and I get the same crash and error message from the original post below, running R from the CLI.If I run R from within ESS (what I normally use), I get: Process R abort trap: 6 at Mon Aug 3 09:15:32 2020If I run R from R.app (the default macOS GUI), the command runs fine and I get the graphic.I am running R 4.0.2 (2020-06-22) on macOS 10.15.6. R was cleanly installed, and XQuartz (2.7.11) was updated afterwards. Regards, Marc SchwartzOn Aug 3, 2020, at 9:05 AM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote:I just got a message from someone else using Catalina 10.15.5 who still gets a crash fromlibrary(rgl) plot(1:10) I don't have Catalina, and haven't seen it. Has anyone else? Duncan Murdoch On 31/05/2020 4:44 p.m., Richard M. Heiberger wrote:I upgraded last night to Catalina 10.15.5 (19F96). The crash has gone away and that example now works normally.On Fri, May 29, 2020 at 3:25 PM Richard M. Heiberger <r...@temple.edu> wrote:my 12:35 email and the attached tmp.txt are from the Terminal.app, No emacs/ESS involved.On Fri, May 29, 2020 at 3:13 PM Duncan Murdoch <murdoch.dun...@gmail.com> wrote:On 29/05/2020 2:21 p.m., Richard M. Heiberger wrote:I attempted to update xquartz when I updated to Catalina, and the samenumber is still the current version number. Here is a related issue, attached tmp2.txt is the R transcript.The interesting thing here is that rgl.quit() prevents rgl from beingreattached.Generally speaking rgl doesn't want to be reloaded in the same R session: detaching it doesn't clean up everything. That's notsomething that I'd put any priority on fixing, whereas I would look atthe problems you're having on startup if I could reproduce them.I wonder if ESS is involved somehow: your sessionInfo listed ESSR on the search list. Do you have the same issues with plain R from theconsole, or R.app?Is there an rgl equivalent for dev.cur()?There's rgl.cur(). rgl only supports two kinds of devices: on a Mac or Linux they'd be displayed as glX or null. Windows also supports the null device (which doesn't display anything), and a different one todisplay within R: I forget how the name is displayed.It might be that you'll need to set options(rgl.useNULL) before starting rgl, and only use the null device. It won't display anything in R, butallows you to call rglwidget() for a display in a browser. Duncan MurdochOn Fri, May 29, 2020 at 1:51 PM Duncan Murdoch <murdoch.dun...@gmail.com> wrote:On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote:I have the same Xquartz as you.I'd guess it should be updated. Generally XQuartz needs updates with every MacOS release, and your 10.15.4 is two releases further along thanmy 10.13.6.I have rgl-0.100.50 from CRANYou could update that, but I doubt if it would make any difference.Apple is macOS Catalina, Version 10.15.4 Do you need hardware information? MacBpok Air (13 -inch, Mid 2012) Processor 2GHz Dual-Core Intel Core i7 Memory 8 GB 1600 MHz DDR3 Graphics Intel HD Graphics 4000 1536 MBI think the XQuartz issue is most likely to help, but if it doesn't, I'mnot sure what I could suggest: I don't have Catalina. Duncan Murdochfrom the Terminal App: The Apple Crash Report is in the attached tmp.txt I didn't send it to Apple. R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.library(rgl)plot(1:10)2020-05-29 12:30:00.536 R[24961:3275889] *** Assertion failure in BOOL NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(), /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:4732020-05-29 12:30:00.543 R[24961:3275889] *** Terminating app due touncaught exception 'NSInternalInconsistencyException', reason: 'NSScreen reconfig must only happen on the main thread.' *** First throw call stack: ( 0 CoreFoundation 0x00007fff371698d7 __exceptionPreprocess + 250 1 libobjc.A.dylib 0x00007fff6ff47a9e objc_exception_throw + 48 2 CoreFoundation 0x00007fff37192bb0 +[NSException raise:format:arguments:] + 88 3 Foundation 0x00007fff398de456 -[NSAssertionHandler handleFailureInFunction:file:lineNumber:description:] + 166 4 AppKit 0x00007fff34503083+[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +361 5 AppKit 0x00007fff34e4bda8 _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243 6 AppKit 0x00007fff34502c85 -[NSApplication(ScreenHandling) _reactToDockChanged] + 144 7 AppKit 0x00007fff345024dc _NSCGSDockMessageReceive + 268 8 HIToolbox 0x00007fff35d34a3c _ZL12DockCallbackjjPvS_ + 1987 9 HIServices 0x00007fff3539c8ec dockClientNotificationProc + 217 10 SkyLight 0x00007fff6626f174_ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +1002 11 SkyLight 0x00007fff6626de71 CGSSnarfAndDispatchDatagrams + 1671 12 SkyLight 0x00007fff6649d5a5 SLSGetNextEventRecordInternal + 83 13 SkyLight 0x00007fff6633bfbe SLEventCreateNextEvent + 136 14 libXplugin.1.dylib 0x000000010686df0c ___xp_init_service_cg_event_port_block_invoke + 104 15 libdispatch.dylib 0x00007fff7108d658 _dispatch_client_callout + 8 16 libdispatch.dylib 0x00007fff7108f818 _dispatch_continuation_pop + 414 17 libdispatch.dylib 0x00007fff7109f4be _dispatch_source_invoke + 2084 18 libdispatch.dylib 0x00007fff71092af6 _dispatch_lane_serial_drain + 263 19 libdispatch.dylib 0x00007fff710935d6 _dispatch_lane_invoke + 363 20 libdispatch.dylib 0x00007fff7109cc09 _dispatch_workloop_worker_thread + 596 21 libsystem_pthread.dylib 0x00007fff712eba3d _pthread_wqthread + 29022 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15)libc++abi.dylib: terminating with uncaught exception of type NSExceptionzsh: abort R rmh@rmhs-Air ~ % On Fri, May 29, 2020 at 12:16 PM Duncan Murdoch <murdoch.dun...@gmail.com> wrote:I'm not seeing that with R-patched r78557, run from the console. I'm not sure I have the same MacOS version as you (R prints the same thing, Apple says High Sierra 10.13.6). I tried with the CRAN binary of rgl 0.100.54. I'd guess the version of XQuartz may be important: I'm not seeing rgl in the call stack, but libXplugin is there. Mine is "XQuartz2.7.11 (xorg-server 1.18.4)". Duncan Murdoch On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote:R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.Natural language support but running in an English localeR is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.if(identical(getOption('pager'), file.path(R.home('bin'), 'pager'))) options(pager='cat') # rather take the ESS one options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient', show.error.locations=TRUE)version_ platform x86_64-apple-darwin17.0 arch x86_64 os darwin17.0 system x86_64, darwin17.0 status major 4 minor 0.0 year 2020 month 04 day 24 svn rev 78286 language R version.string R version 4.0.0 (2020-04-24) nickname Arbor Daylibrary(rgl) plot(1:10)Process R abort trap: 6 at Fri May 29 11:32:59 20202020-05-29 11:32:59.542 R[24448:3255600] *** Assertion failure in BOOLNSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(), /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:4732020-05-29 11:32:59.560 R[24448:3255600] *** Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason:'NSScreen reconfig must only happen on the main thread.' *** First throw call stack: ( 0 CoreFoundation 0x00007fff371698d7 __exceptionPreprocess + 250 1 libobjc.A.dylib 0x00007fff6ff47a9e objc_exception_throw + 48 2 CoreFoundation 0x00007fff37192bb0 +[NSException raise:format:arguments:] + 88 3 Foundation 0x00007fff398de456 -[NSAssertionHandler handleFailureInFunction:file:lineNumber:description:] + 166 4 AppKit 0x00007fff34503083+[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +361 5 AppKit 0x00007fff34e4bda8_NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 2436 AppKit 0x00007fff34502c85 -[NSApplication(ScreenHandling) _reactToDockChanged] + 144 7 AppKit 0x00007fff345024dc _NSCGSDockMessageReceive + 268 8 HIToolbox 0x00007fff35d34a3c _ZL12DockCallbackjjPvS_ + 1987 9 HIServices 0x00007fff3539c8ec dockClientNotificationProc + 217 10 SkyLight 0x00007fff6626f174_ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +1002 11 SkyLight 0x00007fff6626de71 CGSSnarfAndDispatchDatagrams + 1671 12 SkyLight 0x00007fff6649d5a5 SLSGetNextEventRecordInternal + 83 13 SkyLight 0x00007fff6633bfbe SLEventCreateNextEvent + 136 14 libXplugin.1.dylib 0x000000010ffa5f0c ___xp_init_service_cg_event_port_block_invoke + 104 15 libdispatch.dylib 0x00007fff7108d658 _dispatch_client_callout + 8 16 libdispatch.dylib 0x00007fff7108f818 _dispatch_continuation_pop + 414 17 libdispatch.dylib 0x00007fff7109f4be _dispatch_source_invoke + 2084 18 libdispatch.dylib 0x00007fff71092af6 _dispatch_lane_serial_drain + 263 19 libdispatch.dylib 0x00007fff710935d6 _dispatch_lane_invoke + 363 20 libdispatch.dylib 0x00007fff7109cc09 _dispatch_workloop_worker_thread + 596 21 libsystem_pthread.dylib 0x00007fff712eba3d _pthread_wqthread + 29022 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15)libc++abi.dylib: terminating with uncaught exception of type NSException_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
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