Dear Roy, thanks for the message. Is it possible that the sf version you use links to an older version of GDAL/PROJ than the new rgdal does? In other words: if you update sf from CRAN, does the error persist?
Many regards, On 6/22/20 9:28 PM, Roy Mendelssohn - NOAA Federal wrote: > I installed the whole suite available through Prof. Ripley's efforts, and > finally have gotten time to do extensive testing. I just ran into a problem > with code that worked previously. It doesn't break all the mapping code, > only some. The error I get is given below. And yes I realize that this by > itself it isn't much help. It is a function calling a function in another > package that causes the problem. I am going to have to get in with the > debugger and see what is actually being passed, and I will post what is going > on in more detail when I figure it out. This is more just a heads-up that > the new versions can indeed break things in existing code. This is what I > was hoping to find out, because it is going to take some time to pinpoint > where. > > -Roy > >> Error in st_crs.character(comment(x)) : invalid crs: GEOGCRS["unknown", >> DATUM["World Geodetic System 1984", >> ELLIPSOID["WGS 84",6378137,298.257223563, >> LENGTHUNIT["metre",1]], >> ID["EPSG",6326]], >> PRIMEM["Greenwich",0, >> ANGLEUNIT["degree",0.0174532925199433], >> ID["EPSG",8901]], >> CS[ellipsoidal,2], >> AXIS["longitude",east, >> ORDER[1], >> ANGLEUNIT["degree",0.0174532925199433, >> ID["EPSG",9122]]], >> AXIS["latitude",north, >> ORDER[2], >> ANGLEUNIT["degree",0.0174532925199433, >> ID["EPSG",9122]]]] >> In addition: Warning messages: >> 1: In rgdal::rawTransform(projfrom, projto, nrow(xy), xy[, 1], xy[, : >> Using PROJ not WKT2 strings >> 2: In rgdal::rawTransform(projection(obj), crs, nrow(xy), xy[, 1], : >> Using PROJ not WKT2 strings >> 3: In rgdal::rawTransform(projto_int, projfrom, nrow(xy), xy[, 1], : >> >> Error in st_crs.character(comment(x)) : invalid crs: GEOGCRS["unknown", >> DATUM["World Geodetic System 1984", >> ELLIPSOID["WGS 84",6378137,298.257223563, >> LENGTHUNIT["metre",1]], >> ID["EPSG",6326]], >> PRIMEM["Greenwich",0, >> ANGLEUNIT["degree",0.0174532925199433], >> ID["EPSG",8901]], >> CS[ellipsoidal,2], >> AXIS["longitude",east, >> ORDER[1], >> ANGLEUNIT["degree",0.0174532925199433, >> ID["EPSG",9122]]], >> AXIS["latitude",north, >> ORDER[2], >> ANGLEUNIT["degree",0.0174532925199433, >> ID["EPSG",9122]]]] > > -Roy > > >> >> On Jun 12, 2020, at 7:20 AM, Roy Mendelssohn - NOAA Federal >> <roy.mendelss...@noaa.gov> wrote: >> >> I will do the install sometime over the weekend, and test what I have >> (mainly the packages I have that use these). Today is kind of tis up (I >> mean I can do the install easily enough, just no time to do any testing). >> >> Thanks, >> >> -Roy >> >> >>> On Jun 12, 2020, at 7:17 AM, Roger Bivand <roger.biv...@nhh.no> wrote: >>> >>> On Fri, 12 Jun 2020, rmendelss gmail wrote: >>> >>>> Thank you for these efforts. I imagine it will also make it easier to >>>> eventually have these on CRAN. >>>> >>> >>> Do you have the possibility to try out the affected packages in your >>> workflows to provide feedback? At the moment, user feedback can help guide >>> the deployment of CRAN macOS R-spatial binaries. >>> >>> Roger >>> >>>> -Roy >>>> >>>> >>>>> On Jun 12, 2020, at 7:11 AM, Prof Brian Ripley <rip...@stats.ox.ac.uk> >>>>> wrote: >>>>> >>>>> I have put binary packages on CRANextras for lwgeom rgdal rgeos sf built >>>>> with GEOS 3.8.1, GDAL 3.1.0, PROJ 6.3.2. >>>>> >>>>> Install with (e.g.) >>>>> >>>>> options(repos="https://www.stats.ox.ac.uk/pub/RWin";) >>>>> install.packages('rgdal', type = 'binary') >>>>> >>>>> (This needed a development version of the rgdal sources.) >>>>> >>>>> This is just to allow early access: it is planned to use these versions >>>>> of the libs on the CRAN builders soon (but they do need package updates, >>>>> e.g. for rgdal and proj4). >>>>> >>>>> These are all using static libraries to make these self-contained. >>>>> >>>>> (In case anyone is wondering why not PROJ 7 -- that would need unreleased >>>>> changes to the PROJ and GDAL sources and changes to many CRAN packages.) >>>>> >>>>> -- >>>>> Brian D. Ripley, rip...@stats.ox.ac.uk >>>>> Emeritus Professor of Applied Statistics, University of Oxford >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> R-SIG-Mac@r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>> >>>> >>> >>> -- >>> Roger Bivand >>> Department of Economics, Norwegian School of Economics, >>> Helleveien 30, N-5045 Bergen, Norway. >>> voice: +47 55 95 93 55; e-mail: roger.biv...@nhh.no >>> https://orcid.org/0000-0003-2392-6140 >>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en >> >> ********************** >> "The contents of this message do not reflect any position of the U.S. >> Government or NOAA." >> ********************** >> Roy Mendelssohn >> Supervisory Operations Research Analyst >> NOAA/NMFS >> Environmental Research Division >> Southwest Fisheries Science Center >> ***Note new street address*** >> 110 McAllister Way >> Santa Cruz, CA 95060 >> Phone: (831)-420-3666 >> Fax: (831) 420-3980 >> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ >> >> "Old age and treachery will overcome youth and skill." >> "From those who have been given much, much will be expected" >> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. >> > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > -- Edzer Pebesma Institute for Geoinformatics Heisenbergstrasse 2, 48149 Muenster, Germany Phone: +49 251 8333081
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