Thanks Bob. I did this and it did not fix it sadly. I downloaded the Debug version of R-GUI and captured the following after clicking on the same file (which did cause it to crash again) Here is the console log for the R PID (889 in this instance) from loading R to then clicking to load the same file (which froze my system again): https://gist.github.com/bhive01/5efa02237085c7a3ccf6d137e04f7c45 Here is the full Apple Crash Log that came up after I force quit R: https://gist.github.com/bhive01/0eeb32d0a666f875e83440268b69aefd
I hope this is helpful. Please let me know if I need to dig more and recommendations for doing so. Thanks, B On Fri, May 1, 2020 at 5:54 PM Bob Rudis <b...@rud.is> wrote: > > Suggestion: try adding R.app to "Full Disk Access" in the Privacy tab > under Security & Privacy system preferences. > > I'm not experiencing these issues (just now when I tried it; I > generally don't use R.app) > > On Fri, May 1, 2020 at 4:54 PM Brandon Hurr <brandon.h...@gmail.com> wrote: > > > > I'm going to add to the pile on this one. It's hard to nail down > > though. I was able to load Hiroshi's test.R script after loading up > > R-GUI 7827 and just now 7832. I loaded it from multiple directories by > > clicking on it. > > That said, I've been having many issues locking up R-GUI on my 2019 > > MBAir since upgrading to R4.0.0. I can click and load R-GUI with a > > script file, but if I want to load another script it gives me the > > colored pinwheel of death. Sometimes it will load up R-GUI, but then > > pinwheel of death on loading a lengthy script. I'm not sure the length > > is the issue. > > > > I played around with the console a bit and noticed these messages pop > > up when it locks up R: > > error 13:49:54.173449-0700 kernel Sandbox: garcon(763) > > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd)/Data > > standardisation/Database Converts/Conversion script DEV.R > > error 13:49:54.243397-0700 kernel Sandbox: garcon(763) > > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd)/Data > > standardisation/Database Converts > > error 13:49:54.312989-0700 kernel Sandbox: garcon(763) > > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd)/Data > > standardisation > > error 13:49:54.344345-0700 kernel Sandbox: garcon(763) > > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd) > > > > A rough guess here is that the sandboxing isn't working right (or is?) > > and is blocking access of R-GUI to the file which then locks up > > because it's waiting for data? > > > > Anyone else seeing this behavior and have a better idea how to pin it down? > > > > Thanks, > > B > > > > > > On Thu, Apr 30, 2020 at 6:07 AM Hiroshi Hakoyama > > <hiroshi-hakoy...@nagano.ac.jp> wrote: > > > > > > Dear All, > > > > > > Environment: > > > R version 4.0.0 (2020-04-24) -- "Arbor Day" > > > [R.app GUI 1.71 (7827) x86_64-apple-darwin17.0] > > > macOS: Mojave and Catalina > > > Removed file for the test: .Rapp.history > > > > > > Description: > > > R.app crashes when a large file (e.g., test.R) is double-clicked on > > > Mojave and Catalina. The crash does not occur on High Sierra. Small > > > source files (e.g., test2.R) do not cause the crash on Mojave and > > > Catalina. > > > > > > How-To-Repeat: > > > Double-click test.R (or open test.R using R.app) on Catalina or Mojave. > > > > > > Fix: > > > unknown > > > > > > Crash Report is too large to paste to the email. > > > > > > > > > Best regards, > > > > > > Hiroshi Hakoyama > > > Nagano University > > > > > > test.R > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > ############################################################################### > > > x <- rnorm(100000) > > > y <- rnorm(100000) > > > hist(x) > > > hist(y) > > > > > > test2.R > > > x <- rnorm(100000) > > > y <- rnorm(100000) > > > hist(x) > > > hist(y) > > > > > > system.log > > > Apr 30 20:54:40 ec7 R[1147]: assertion failed: 19E287: libxpc.dylib + > > > 92807 [32B0E31E-9DA3-328B-A962-BC9591B93537]: 0x89 > > > _______________________________________________ > > > R-SIG-Mac mailing list > > > R-SIG-Mac@r-project.org > > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > > > _______________________________________________ > > R-SIG-Mac mailing list > > R-SIG-Mac@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
