Roy, great, thanks, I'll try to replicate that. I'm really surprised that an upgrade would delete headers - that's very unfriendly to say the least ;). I did upgrade Mojave but I did not upgrade Xcode (newer version tend to break more and more things) so that's maybe why I didn't see it.
Thanks, Simon > On Apr 4, 2019, at 4:19 PM, Roy Mendelssohn - NOAA Federal > <roy.mendelss...@noaa.gov> wrote: > > Hi Simon: > > here goes. I was running 10.13.xx, xx being whatever was the most recent > version. I was compiling packages from source no problem. Also, the > Upgrade Section of App Store was telling me there was an incompatible version > of software available, which was a new version of Xcode. > > I upgraded to 10.14.4, by the usual means, did nothing special. > > Upgrades in App Store said there was a new version of Xcode (among other > things). So installed that. > > Ran Xcode, so that it would install "Other Components" which it often does > with a new version. > > To be certain I had the Command lIne Tools, in a terminal I ran: sudo > xcode-select --install > > Next time I ran RStudio, two package upgrades were from source (I apologize > I don't remember which packages). Compilation failed with errors of couldn't > find the appropriate header files. > > Ran the command in my note. > > Restarted RStudio, asked it to check for package updates, same packages > appeared, compilation went fine. > > I am running Xcode 10.2 > > HTH, > > -Roy > > >> On Apr 4, 2019, at 12:26 PM, Simon Urbanek <simon.urba...@r-project.org> >> wrote: >> >> Roy, >> >> thanks, but can you give some details? I'm on a Mojave system and don't see >> any issues - this will likely depend on your Xcode installation. Does it >> mean some Xcode version is lacking headers? Which version, how did you >> install it? >> >> Thanks, >> Simon >> >> >>> On Mar 30, 2019, at 2:21 PM, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >>> <r-sig-mac@r-project.org> wrote: >>> >>> I recently updated to Mojave and all of a sudden I was getting header not >>> found errors when trying to compile packages. I was pretty certain my >>> Makevars files was correct, as I had been compiling before the upgrade >>> successfully, and the compilers hadn't changed. >>> >>> The following is in some of the docs, but just in case it helps, cause it >>> took me awhile to find it, after installing the Command Line Tools for >>> Xcode, you should run: >>> >>> sudo installer -pkg \ >>> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg >>> \ >>> -target / >>> >>> and voila packages that had failed to compile just a few minutes ago >>> compiled successfully. >>> >>> Hope this helps someone. >>> >>> -Roy >>> >>> >>> ********************** >>> "The contents of this message do not reflect any position of the U.S. >>> Government or NOAA." >>> ********************** >>> Roy Mendelssohn >>> Supervisory Operations Research Analyst >>> NOAA/NMFS >>> Environmental Research Division >>> Southwest Fisheries Science Center >>> ***Note new street address*** >>> 110 McAllister Way >>> Santa Cruz, CA 95060 >>> Phone: (831)-420-3666 >>> Fax: (831) 420-3980 >>> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ >>> >>> "Old age and treachery will overcome youth and skill." >>> "From those who have been given much, much will be expected" >>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>> Jr. >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
