Robert Gulotty previously wrote: > I am using macOS High Sierra, 10.13.2 (17C205) with R.App GUI 1.70 (7463) > x86_64-apple-darwin15.6.0 R version 3.4.3 > > R hangs when I try to open a .R script in finder, even if R has been running. > It also hangs every time I use the File Open menu to select a file. It > either crashes when I try to navigate from folder to folder within the open > file interface, or upon selecting a file. This has been the case for > several updates of macOS, and through several versions of R and across two > computers. I have uninstalled and reinstalled the R app, R, and the various > suggested tools for Mac OSX.
I am experiencing much the same problem, on macS 10.13.3 (17D102) with R.app
GUI 1.70 (7463 El Capitan build), R version 3.4.3.
R.app hangs when I try to open an existing file through any avenue. I can
open a new document and paste content into it from TextEdit, so that is now
what I do every time I want to run or edit an existing R file – rather
inconvenient.
I am a Mac developer, familiar with Xcode, and am happy to work with somebody
on this problem if there is difficulty in reproducing the bug; it happens 100%
of the time for me.
If I do “sample R 10” in Terminal after the app has hung, I get the following
output for the thread that is hung. This is a very weird backtrace; note the
0x0 in the middle of it, following sigactionSegv. Maybe R.app is installing a
signal handler, and a segfault is happening inside NSTypesetter, and then
things go south from there? I have no idea. :->
Call graph:
8871 Thread_2856867 DispatchQueue_1: com.apple.main-thread (serial)
+ 8871 start (in libdyld.dylib) + 1 [0x7fff5c7c9115]
+ 8871 main (in R) + 817 [0x105ee9ba1]
+ 8871 -[REngine runREPL] (in R) + 225 [0x105efae31]
+ 8871 run_REngineRmainloop (in R) + 287 [0x105f06ddf]
+ 8871 R_ReplDLLdo1 (in libR.dylib) + 139 [0x1060e4e6b]
main.c:365
+ 8871 Re_ReadConsole (in R) + 184 [0x105ef85c8]
+ 8871 -[RController handleReadConsole:] (in R) + 186
[0x105eeec6a]
+ 8871 -[RController doProcessEvents:] (in R) + 204
[0x105ef4a4c]
+ 8871 -[NSApplication(NSEvent)
_nextEventMatchingEventMask:untilDate:inMode:dequeue:] (in AppKit) + 3044
[0x7fff32c2eb4c]
+ 8871 _DPSNextEvent (in AppKit) + 2788 [0x7fff3249921e]
+ 8871 AEProcessAppleEvent (in HIToolbox) + 55
[0x7fff341dd5e0]
+ 8871 aeProcessAppleEvent (in AE) + 383
[0x7fff35f9b565]
+ 8871 dispatchEventAndSendReply(AEDesc const*,
AEDesc*) (in AE) + 41 [0x7fff35f9b677]
+ 8871 aeDispatchAppleEvent(AEDesc const*,
AEDesc*, unsigned int, unsigned char*) (in AE) + 1788 [0x7fff35f9bdd0]
+ 8871 _NSAppleEventManagerGenericHandler (in
Foundation) + 102 [0x7fff36fb0282]
+ 8871 -[NSAppleEventManager
dispatchRawAppleEvent:withRawReply:handlerRefCon:] (in Foundation) + 287
[0x7fff36fb0404]
+ 8871
-[NSApplication(NSAppleEventHandling) _handleCoreEvent:withReplyEvent:] (in
AppKit) + 766 [0x7fff3249db95]
+ 8871
-[NSApplication(NSAppleEventHandling) _handleAEOpenDocumentsForURLs:] (in
AppKit) + 235 [0x7fff32697138]
+ 8871
__69-[NSApplication(NSAppleEventHandling)
_handleAEOpenDocumentsForURLs:]_block_invoke (in AppKit) + 891
[0x7fff326976dd]
+ 8871
-[NSApplication(NSAppleEventHandling) _openURLs:withCompletionHandler:] (in
AppKit) + 1026 [0x7fff328bd965]
+ 8871
withWindowOrderingObserverHeuristic (in AppKit) + 496 [0x7fff328bddab]
+ 8871
__69-[NSApplication(NSAppleEventHandling)
_handleAEOpenDocumentsForURLs:]_block_invoke_2 (in AppKit) + 2122
[0x7fff326b3667]
+ 8871
+[_NSWindowTransformAnimation
waitForAnimationToCompleteOnWindows:forFullScreen:] (in AppKit) + 69
[0x7fff326b3922]
+ 8871
CA::Transaction::commit() (in QuartzCore) + 487 [0x7fff3ffe343d]
+ 8871
CA::Context::commit_transaction(CA::Transaction*) (in QuartzCore) + 326
[0x7fff3ffe3894]
+ 8871
CA::Layer::layout_and_display_if_needed(CA::Transaction*) (in QuartzCore) + 35
[0x7fff3ffe47f9]
+ 8871
CA::Layer::display_if_needed(CA::Transaction*) (in QuartzCore) + 633
[0x7fff3ffe4d3b]
+ 8871 -[NSTextLayer
display] (in AppKit) + 1591 [0x7fff32fcec67]
+ 8871
-[NSTextLayer drawInContext:] (in AppKit) + 235 [0x7fff325ecfb5]
+ 8871
-[NSTextView(NSTextView_LayerBacking) displayTextLayer:withContext:] (in
AppKit) + 130 [0x7fff3301f13d]
+ 8871
-[NSFocusStack performWithFocusView:inWindow:usingBlock:] (in AppKit) + 99
[0x7fff325ed1fe]
+ 8871
__68-[NSTextView(NSTextView_LayerBacking)
displayTextLayer:withContext:]_block_invoke (in AppKit) + 449 [0x7fff3301f30b]
+ 8871
-[RScriptEditorTextView drawRect:] (in R) + 437 [0x105f3ac15]
+ 8871
-[RTextView drawRect:] (in R) + 608 [0x105f26f70]
+ 8871
-[NSTextView drawRect:] (in AppKit) + 1203 [0x7fff325ed8a4]
+
8871 -[NSLayoutManager glyphRangeForBoundingRect:inTextContainer:] (in
UIFoundation) + 81 [0x7fff5867c59f]
+
8871 -[NSLayoutManager(NSPrivate)
_glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] (in
UIFoundation) + 918 [0x7fff5867c93b]
+
8871 -[NSLayoutManager(NSPrivate)
_firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] (in
UIFoundation) + 1534 [0x7fff5867df5e]
+
8871 _NSFastFillAllLayoutHolesForGlyphRange (in UIFoundation) + 1851
[0x7fff5867ebda]
+
8871 _resizeTextViewsIfNeeded (in UIFoundation) + 285 [0x7fff5878e09f]
+
8871 -[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] (in
UIFoundation) + 938 [0x7fff58679dbc]
+
8871 -[NSTextView setConstrainedFrameSize:] (in AppKit) + 635
[0x7fff32550438]
+
8871 -[NSTextView setFrameSize:] (in AppKit) + 143 [0x7fff32550ec6]
+
8871 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] (in
AppKit) + 1081 [0x7fff325513c7]
+
8871 -[NSView setFrameSize:] (in AppKit) + 1413 [0x7fff324bba73]
+
8871 -[NSView(NSInternal) _updateLayerGeometryFromView] (in
AppKit) + 755 [0x7fff324a307c]
+
8871 -[NSView setNeedsDisplay:] (in AppKit) + 79
[0x7fff324775e1]
+
8871 -[NSTextView setNeedsDisplayInRect:] (in AppKit) + 58
[0x7fff3256e563]
+
8871 -[NSTextView
setNeedsDisplayInRect:avoidAdditionalLayout:] (in AppKit) + 1428
[0x7fff3254f41f]
+
8871 -[NSLayoutManager
glyphRangeForBoundingRect:inTextContainer:] (in UIFoundation) + 81
[0x7fff5867c59f]
+
8871 -[NSLayoutManager(NSPrivate)
_glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] (in
UIFoundation) + 918 [0x7fff5867c93b]
+
8871 -[NSLayoutManager(NSPrivate)
_firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] (in
UIFoundation) + 1534 [0x7fff5867df5e]
+
8871 _NSFastFillAllLayoutHolesForGlyphRange (in
UIFoundation) + 1615 [0x7fff5867eaee]
+
8871 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] (in
UIFoundation) + 722 [0x7fff58696846]
+
8871 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 580 [0x7fff5869828c]
+
8871 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 242 [0x7fff5869851a]
+
8871 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
(in UIFoundation) + 2762 [0x7fff5873bc24]
+
8871 -[NSATSTypesetter
layoutParagraphAtPoint:] (in UIFoundation) + 181 [0x7fff58698ce9]
+
8871 -[NSATSTypesetter
_layoutLineFragmentStartingWithGlyphAtIndex:characterIndex:atPoint:renderingContext:]
(in UIFoundation) + 7734 [0x7fff586854bc]
+
8871 -[NSTypesetter
setLineFragmentRect:forGlyphRange:usedRect:baselineOffset:] (in UIFoundation)
+ 276 [0x7fff5869aa67]
+
8871 -[NSLayoutManager(NSPrivate)
setLineFragmentRect:forGlyphRange:usedRect:baselineOffset:] (in UIFoundation)
+ 115 [0x7fff5869adb3]
+
8871 -[NSLayoutManager
setLineFragmentRect:forGlyphRange:usedRect:] (in UIFoundation) + 394
[0x7fff5869af5d]
+
8871
-[NSLayoutManager(NSPrivate) _updateUsageForTextContainer:addingUsedRect:] (in
UIFoundation) + 611 [0x7fff586709f7]
+
8871
-[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] (in
UIFoundation) + 938 [0x7fff58679dbc]
+
8871 -[NSTextView
setConstrainedFrameSize:] (in AppKit) + 635 [0x7fff32550438]
+
8871 -[NSTextView
setFrameSize:] (in AppKit) + 143 [0x7fff32550ec6]
+
8871
-[NSTextView(NSPrivate) _setFrameSize:forceScroll:] (in AppKit) + 1081
[0x7fff325513c7]
+
8871 -[NSView
setFrameSize:] (in AppKit) + 2061 [0x7fff324bbcfb]
+
8871 -[NSView
_postFrameChangeNotification] (in AppKit) + 83 [0x7fff324c16f8]
+
8871
-[NSClipView _reflectDocumentViewFrameChange] (in AppKit) + 692
[0x7fff3255769d]
+
8871
__45-[NSClipView _reflectDocumentViewFrameChange]_block_invoke (in AppKit) +
98 [0x7fff32943f3a]
+
8871
-[NSScrollView reflectScrolledClipView:] (in AppKit) + 892 [0x7fff324888a0]
+
8871
-[NSScrollView _tileWithoutRecursing] (in AppKit) + 47 [0x7fff3247e8cb]
+
8871
-[NSScrollView tile] (in AppKit) + 712 [0x7fff3247ec3d]
+
8871
-[NSScrollView _setContentViewFrame:] (in AppKit) + 362 [0x7fff32480604]
+
8871 -[NSView setFrame:] (in AppKit) + 371 [0x7fff324d1fae]
+
8871 -[NSClipView setFrameSize:] (in AppKit) + 431 [0x7fff324e0179]
+
8871 -[NSView setFrameSize:] (in AppKit) + 1672 [0x7fff324bbb76]
+
8871 -[NSView resizeSubviewsWithOldSize:] (in AppKit) + 504 [0x7fff324dd345]
+
8871 -[NSView resizeWithOldSuperviewSize:] (in AppKit) + 814
[0x7fff324ddb9a]
+
8871 -[NSView setFrame:] (in AppKit) + 371 [0x7fff324d1fae]
+
8871 -[NSTextView setFrameSize:] (in AppKit) + 143 [0x7fff32550ec6]
+
8871 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] (in AppKit)
+ 1278 [0x7fff3255148c]
+
8871 -[NSLayoutManager boundingRectForGlyphRange:inTextContainer:]
(in UIFoundation) + 51 [0x7fff586a2211]
+
8871 -[NSLayoutManager(NSPrivate)
_boundingRectForGlyphRange:inTextContainer:fast:fullLineRectsOnly:] (in
UIFoundation) + 125 [0x7fff5869da30]
+
8871 -[NSLayoutManager(NSPrivate)
_rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:]
(in UIFoundation) + 59 [0x7fff587891bf]
+
8871 -[NSLayoutManager(NSPrivate)
_rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:rectArray:rectArrayCapacity:]
(in UIFoundation) + 749 [0x7fff58786f1d]
+
8871 _NSFastFillAllLayoutHolesForGlyphRange (in
UIFoundation) + 1615 [0x7fff5867eaee]
+
8871 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] (in
UIFoundation) + 722 [0x7fff58696846]
+
8871 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 295 [0x7fff5869816f]
+
8871 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 580 [0x7fff5869828c]
+
8871 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 242 [0x7fff5869851a]
+
8871 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
(in UIFoundation) + 2599 [0x7fff5873bb81]
+
8871 -[NSTypesetter
_getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
(in UIFoundation) + 1320 [0x7fff58698aab]
+
8871 0x0
+
8871 _sigtramp (in
libsystem_platform.dylib) + 26 [0x7fff5ca4af5a]
+
8871 sigactionSegv (in libR.dylib) + 627
[0x1060e70e3] main.c:612
+
8871 Re_ReadConsole (in R) + 184
[0x105ef85c8]
+
8871 -[RController
handleReadConsole:] (in R) + 186 [0x105eeec6a]
+
8871 -[RController
doProcessEvents:] (in R) + 204 [0x105ef4a4c]
+
8871 -[NSApplication(NSEvent)
_nextEventMatchingEventMask:untilDate:inMode:dequeue:] (in AppKit) + 3044
[0x7fff32c2eb4c]
+
8871 _DPSNextEvent (in AppKit)
+ 2085 [0x7fff32498f5f]
+
8871
_BlockUntilNextEventMatchingListInModeWithFilter (in HIToolbox) + 64
[0x7fff341cd914]
+
8871 ReceiveNextEventCommon
(in HIToolbox) + 613 [0x7fff341cdb96]
+
8871
RunCurrentEventLoopInMode (in HIToolbox) + 286 [0x7fff341cde26]
+
8871
CFRunLoopRunSpecific (in CoreFoundation) + 483 [0x7fff34eb5f43]
+
8871 __CFRunLoopRun
(in CoreFoundation) + 2427 [0x7fff34eb6b4b]
+
8871
__CFRunLoopDoTimers (in CoreFoundation) + 346 [0x7fff34ebf54a]
+
8871
__CFRunLoopDoTimer (in CoreFoundation) + 1095 [0x7fff34ebfa47]
+
8871
__CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ (in CoreFoundation)
+ 20 [0x7fff34ebfdd4]
+
8871
__NSFireDelayedPerform (in Foundation) + 409 [0x7fff36fea445]
+
8871
_NSFastFillAllLayoutHolesForGlyphRange (in UIFoundation) + 1615
[0x7fff5867eaee]
+
8871
-[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] (in
UIFoundation) + 722 [0x7fff58696846]
+
8871
-[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 295 [0x7fff5869816f]
+
8871
-[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 580 [0x7fff5869828c]
+
8871 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] (in
UIFoundation) + 242 [0x7fff5869851a]
+
8871 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
(in UIFoundation) + 2599 [0x7fff5873bb81]
+
8871 -[NSTypesetter
_getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
(in UIFoundation) + 1320 [0x7fff58698aab]
+
8871 -[RScriptEditorTypeSetter actionForControlCharacterAtIndex:] (in R) +
47 [0x105f56c2f]
+
8871 0x0 + 0 [0x0]
Cheers,
-B.
Benjamin C. Haller
Messer Lab
Cornell University
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