First of all, I want to thank David Wensemius and Brandon Hurr. Next, I want to say that my problem was more complicated than removing the invisible file, .RData. After removal and startup of RStudio, I received:
Error: object 'CF.mb' not found. I removed the following files: .Rhistory .Rprfile .Rprofile .Rdata. After removing them, my error message went away. Paul On Feb 16, 2018, at 6:00 AM, r-sig-mac-requ...@r-project.org<mailto:r-sig-mac-requ...@r-project.org> wrote: ******************************************************************************************************************************************** Send R-SIG-Mac mailing list submissions to r-sig-mac@r-project.org<mailto:r-sig-mac@r-project.org> To subscribe or unsubscribe via the World Wide Web, visit https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=S86paWuTkKAFxU7d9pmaDrGf5fQvUDN4lTfSAFihUSI&s=5USUZGu_N566kZFSUUNPm__bJ6mBMkTahr2mCeIwDXw&e= or, via email, send a message with subject or body 'help' to r-sig-mac-requ...@r-project.org You can reach the person managing the list at r-sig-mac-ow...@r-project.org When replying, please edit your Subject line so it is more specific than "Re: Contents of R-SIG-Mac digest..." Today's Topics: 1. Re: R-SIG-Mac Digest, Vol 180, Issue 5 (Ossenbruggen, Paul) 2. Re: R-SIG-Mac Digest, Vol 180, Issue 5 (David Winsemius) 3. Re: R-SIG-Mac Digest, Vol 180, Issue 5 (Brandon Hurr) ---------------------------------------------------------------------- Message: 1 Date: Thu, 15 Feb 2018 14:18:45 +0000 From: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> To: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> Subject: Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5 Message-ID: <e70bf2ce-f724-4d3b-aaa4-276387e68...@unh.edu> Content-Type: text/plain; charset="utf-8" Given David Winsemius’ reply, I obtained the following information: PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".*" -ls 52645352 24 -rw-r--r-- 1 PJO staff 8196 Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//.DS_Store 52645353 16 -rw-r--r-- 1 PJO staff 6148 Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//extdata/.DS_Store The following PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.Rdata" -ls PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.mb" -ls PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".mb" -ls return nothing or PJO:SDE PJO$ I hope this information is of some use. Thanks, Paul On Feb 15, 2018, at 6:00 AM, r-sig-mac-requ...@r-project.org wrote: Caution - External Email; ******************************************************************************************************************************************** Send R-SIG-Mac mailing list submissions to r-sig-mac@r-project.org To subscribe or unsubscribe via the World Wide Web, visit https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=lWzj9K1TzXbvPZJx5dD70IvjNFcxTS-iuZY36R4qlDo&e= or, via email, send a message with subject or body 'help' to r-sig-mac-requ...@r-project.org You can reach the person managing the list at r-sig-mac-ow...@r-project.org When replying, please edit your Subject line so it is more specific than "Re: Contents of R-SIG-Mac digest..." Today's Topics: 1. R installation error caused by a bogus file. (Ossenbruggen, Paul) 2. Re: Update of RcppParallel failed (Marc Girondot) 3. Re: R installation error caused by a bogus file. (David Winsemius) ---------------------------------------------------------------------- Message: 1 Date: Wed, 14 Feb 2018 15:01:46 +0000 From: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> To: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> Subject: [R-SIG-Mac] R installation error caused by a bogus file. Message-ID: <0b742675-f1eb-4f2b-9f5d-f8587d399...@unh.edu> Content-Type: text/plain; charset="utf-8" I receive the following error whenever I restart R and reload R onto my computer: Error: object 'CF.mb' not found [R.app GUI 1.70 (7463) x86_64-apple-darwin15.6.0] The object 'CF.mb’ file is a bogus file. In actually, it does not and should not exist and R should not attempting to load it. I suspect that I created it by mistake when I worked with RStudio in creating a R package called “CF”. Most likely I typed “CF.mb" instead of “CF.md.” The extension “.md” makes sense. It is extension for a Markdown file. “.mb” stands for some animation program extension, which I am not using. QUESTION: How do I stop R from looking for this object? Apparently, R has saved a call to the 'CF.mb’ file somewhere in its memory. My guess if I erase this call, I will be running R the way it is designed. Thanks, Paul ------------------------------ Message: 2 Date: Wed, 14 Feb 2018 16:11:11 +0100 From: Marc Girondot <marc_...@yahoo.fr> To: Keith O'Hara <keith.oh...@nyu.edu>, r-sig-mac R <r-sig-mac@r-project.org> Subject: Re: [R-SIG-Mac] Update of RcppParallel failed Message-ID: <14a19e19-d1aa-d189-961d-dc0f988dc...@yahoo.fr> Content-Type: text/plain; charset="utf-8"; Format="flowed" Hi Keith, When I try just now, a new version of RcppParallel was available (4.3.20.2; previous one was 4.3.20.1): essai de l'URL 'https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_src_contrib_RcppParallel-5F4.3.20.2.tar.gz&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=tR-Ab93uBbFJM8JTcIhOKJjwcpsCBojt9HslLckRpD0&e=' And it compiles without problem ! So the problem is solved ! Thanks Marc Le 14/02/2018 à 14:58, Keith O'Hara a écrit : This looks like an issue to bring up with the Rcpp guys, not R… but can you provide a full printout of the error? I’m guessing this failed when compiling a C file, not C++. On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac <r-sig-mac@r-project.org> wrote: This morning I had an update to apply for RcppParallel but it failed Here are some information: update.packages() RcppParallel : Version 4.3.20 installed in /Library/Frameworks/R.framework/Versions/3.5/Resources/library Version 4.3.20.1 available at https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=Q1PNswfQSKGd9Ow-GalzQ1NXiyozpmVIw8u15cvI6vo&e= .... During instal, I had this error error: invalid argument '-std=gnu++11' not allowed with 'C' It failed with the two versions of clang that I have installed: clang++ --version clang version 5.0.1 (tags/RELEASE_501/final) Target: x86_64-apple-darwin17.4.0 Thread model: posix InstalledDir: /usr/local/opt/llvm/bin or clang++ --version Apple LLVM version 9.0.0 (clang-900.0.39.2) Target: x86_64-apple-darwin17.4.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Do you have some idea about what's happened and how to solve this problem ? Thanks Marc _________________ Information on my R version: R.Version() $platform [1] "x86_64-apple-darwin15.6.0" $arch [1] "x86_64" $os [1] "darwin15.6.0" $system [1] "x86_64, darwin15.6.0" $status [1] "Under development (unstable)" $major [1] "3" $minor [1] "5.0" $year [1] "2018" $month [1] "02" $day [1] "13" $`svn rev` [1] "74247" $language [1] "R" $version.string [1] "R Under development (unstable) (2018-02-13 r74247)" $nickname [1] "Unsuffered Consequences" _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=lWzj9K1TzXbvPZJx5dD70IvjNFcxTS-iuZY36R4qlDo&e= ------------------------------ Message: 3 Date: Wed, 14 Feb 2018 08:26:38 -0800 From: David Winsemius <dwinsem...@comcast.net> To: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> Cc: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> Subject: Re: [R-SIG-Mac] R installation error caused by a bogus file. Message-ID: <f149708c-6939-4cc1-ace0-d042e0ffb...@comcast.net> Content-Type: text/plain; charset="utf-8" On Feb 14, 2018, at 7:01 AM, Ossenbruggen, Paul <paul.ossenbrug...@unh.edu> wrote: I receive the following error whenever I restart R and reload R onto my computer: Error: object 'CF.mb' not found [R.app GUI 1.70 (7463) x86_64-apple-darwin15.6.0] The object 'CF.mb’ file is a bogus file. In actually, it does not and should not exist and R should not attempting to load it. I suspect that I created it by mistake when I worked with RStudio in creating a R package called “CF”. Most likely I typed “CF.mb" instead of “CF.md.” The extension “.md” makes sense. It is extension for a Markdown file. “.mb” stands for some animation program extension, which I am not using. QUESTION: How do I stop R from looking for this object? Apparently, R has saved a call to the 'CF.mb’ file somewhere in its memory. My guess if I erase this call, I will be running R the way it is designed. Have you deleted your `.Rdata` file? It's an invisible file and you may need to use Terminal.app to remove it from you startup directory. Where exactly that might be depends on how Rstudio is configured. -- David Winsemius Alameda, CA, USA 'Any technology distinguishable from magic is insufficiently advanced.' -Gehm's Corollary to Clarke's Third Law ------------------------------ Subject: Digest Footer _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=lWzj9K1TzXbvPZJx5dD70IvjNFcxTS-iuZY36R4qlDo&e= ------------------------------ End of R-SIG-Mac Digest, Vol 180, Issue 5 ***************************************** ------------------------------ Message: 2 Date: Thu, 15 Feb 2018 08:42:47 -0800 From: David Winsemius <dwinsem...@comcast.net> To: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> Cc: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> Subject: Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5 Message-ID: <71215ac9-0af2-444e-9b3f-96d6b5672...@comcast.net> Content-Type: text/plain; charset="utf-8" On Feb 15, 2018, at 6:18 AM, Ossenbruggen, Paul <paul.ossenbrug...@unh.edu> wrote: Given David Winsemius’ reply, I obtained the following information: PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".*" -ls 52645352 24 -rw-r--r-- 1 PJO staff 8196 Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//.DS_Store 52645353 16 -rw-r--r-- 1 PJO staff 6148 Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//extdata/.DS_Store The following PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.Rdata" -ls PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.mb" -ls PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".mb" -ls return nothing or PJO:SDE PJO$ I hope this information is of some use. 1) When you reply to a posting you get from mailing list you should aggressively trim the stuff that is not needed to understand you query. 2) My approach to managing my invisible files in the MacOS is to make thm visible with this at a Terminal session: defaults write com.apple.finder AppleShowAllFiles YES Then you can find .Rdata files in whatever directory they might reside. I say "they" becaus you might have one in any directory that was your working directory at the time of a shutdown where you accept the R.app's offer to save work. So, don't just look at your Library sub directory, which is not a typical place to house a working directory. Instead look everywhere: find /Users/username/ -iname ".R*" Thanks, Paul David Winsemius Alameda, CA, USA 'Any technology distinguishable from magic is insufficiently advanced.' -Gehm's Corollary to Clarke's Third Law ------------------------------ Message: 3 Date: Thu, 15 Feb 2018 15:13:52 -0800 From: Brandon Hurr <brandon.h...@gmail.com> To: David Winsemius <dwinsem...@comcast.net> Cc: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu>, "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> Subject: Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5 Message-ID: <cag2omvujvxfvpg3e9n1ifscn1gh1q3xipq5qwhw_yz3p0ex...@mail.gmail.com> Content-Type: text/plain; charset="utf-8" A newish shortcut also makes this easier. CMD + Shift + . This toggles hidden files without using terminal. 2) My approach to managing my invisible files in the MacOS is to make thm visible with this at a Terminal session: defaults write com.apple.finder AppleShowAllFiles YES ------------------------------ Subject: Digest Footer _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=S86paWuTkKAFxU7d9pmaDrGf5fQvUDN4lTfSAFihUSI&s=5USUZGu_N566kZFSUUNPm__bJ6mBMkTahr2mCeIwDXw&e= ------------------------------ End of R-SIG-Mac Digest, Vol 180, Issue 6 ***************************************** [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
