Failing to get current rms package to compile (and appears that the CRAN build machine fails as well). The penultimate version of rms succeeds.
Both from console and cmd-line I get this response in R 3.4.0 (just installed today) running El Cap 10.11.6 with Xcode Version 8.2.1 (8C1002): trying URL 'https://cran.cnr.berkeley.edu/src/contrib/rms_5.1-1.tar.gz' Content type 'application/x-gzip' length 521311 bytes (509 KB) ================================================== downloaded 509 KB Loading required package: lattice Loading required package: sos Loading required package: brew Loading required package: rms Loading required package: Hmisc Loading required package: survival Loading required package: Formula Loading required package: stats Loading required package: ggplot2 Attaching package: ‘Hmisc’ The following objects are masked from ‘package:base’: format.pval, round.POSIXt, trunc.POSIXt, units Loading required package: SparseM Attaching package: ‘SparseM’ The following object is masked from ‘package:base’: backsolve ##------ 2017-05-04 ------## Loading required package: graphics Attaching package: ‘graphics’ The following object is masked from ‘package:SparseM’: image * installing *source* package ‘rms’ ... ** package ‘rms’ successfully unpacked and MD5 sums checked ** libs clang -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o gfortran -fPIC -g -O2 -c lrmfit.f -o lrmfit.o gfortran -fPIC -g -O2 -c mlmats.f -o mlmats.o gfortran -fPIC -g -O2 -c ormuv.f -o ormuv.o gfortran -fPIC -g -O2 -c robcovf.f -o robcovf.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rms.so init.o lrmfit.o mlmats.o ormuv.o robcovf.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/rms/libs ** R ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Loading required package: lattice Loading required package: sos Loading required package: brew Loading required package: rms Loading required package: Hmisc Loading required package: survival Loading required package: Formula Loading required package: stats Loading required package: ggplot2 Attaching package: ‘Hmisc’ The following objects are masked from ‘package:base’: format.pval, round.POSIXt, trunc.POSIXt, units Loading required package: SparseM Attaching package: ‘SparseM’ The following object is masked from ‘package:base’: backsolve Error: package or namespace load failed for ‘rms’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rms/libs/rms.so': dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rms/libs/rms.so, 6): Symbol not found: ___addtf3 Referenced from: /usr/local/lib/libquadmath.0.dylib Expected in: /usr/local/lib/libgcc_s.1.dylib in /usr/local/lib/libquadmath.0.dylib ##------ 2017-05-04 ------## Loading required package: graphics Attaching package: ‘graphics’ The following object is masked from ‘package:SparseM’: image Error: package or namespace load failed for ‘rms’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rms/libs/rms.so': dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rms/libs/rms.so, 6): Symbol not found: ___addtf3 Referenced from: /usr/local/lib/libquadmath.0.dylib Expected in: /usr/local/lib/libgcc_s.1.dylib in /usr/local/lib/libquadmath.0.dylib Error: loading failed Execution halted The downloaded source packages are in ‘/private/var/folders/yq/m3j1jqtj6hq6s5mq_v0jn3s80000gn/T/Rtmpplg8Th/downloaded_packages’ (WARNING: partial output only, ask package author to use Rprintf instead!) ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rms’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rms’ I get the same result with this (minus the request "to use Rprinf instead!" $ R CMD INSTALL /Users/davidwinsemius/Downloads/rms_5.1-1.tar.gz Reported to Frank but he has seen no problems in his Linux builds. This page: https://github.com/JuliaLang/julia/issues/636 ... has a posting that says: "I found the solution: putting /usr/local/gfortran/lib at the beginning of DYLD_LIBRARY_PATH solved the problem. Previously I had .../gfortran/lib at the end of DYLD_LIBRARY_PATH." What more do I need to supply? -- David Winsemius Alameda, CA, USA > sessionInfo() R version 3.4.0 (2017-04-21) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: OS X El Capitan 10.11.6 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] grDevices utils datasets graphics stats methods base other attached packages: [1] rms_5.1-1 SparseM_1.77 Hmisc_4.0-3 ggplot2_2.2.1 [5] Formula_1.2-1 survival_2.41-3 sos_1.4-1 brew_1.0-6 [9] lattice_0.20-35 loaded via a namespace (and not attached): [1] Rcpp_0.12.10 compiler_3.4.0 RColorBrewer_1.1-2 [4] plyr_1.8.4 base64enc_0.1-3 tools_3.4.0 [7] rpart_4.1-11 digest_0.6.12 tibble_1.3.0 [10] polspline_1.1.12 gtable_0.2.0 checkmate_1.8.2 [13] htmlTable_1.9 nlme_3.1-131 Matrix_1.2-10 [16] mvtnorm_1.0-6 gridExtra_2.2.1 stringr_1.2.0 [19] cluster_2.0.6 knitr_1.15.1 htmlwidgets_0.8 [22] MatrixModels_0.4-1 grid_3.4.0 nnet_7.3-12 [25] data.table_1.10.4 foreign_0.8-68 multcomp_1.4-6 [28] TH.data_1.0-8 latticeExtra_0.6-28 magrittr_1.5 [31] codetools_0.2-15 MASS_7.3-47 backports_1.0.5 [34] scales_0.4.1 htmltools_0.3.6 splines_3.4.0 [37] colorspace_1.3-2 quantreg_5.33 sandwich_2.3-4 [40] stringi_1.1.5 acepack_1.4.1 lazyeval_0.2.0 [43] munsell_0.4.3 zoo_1.8-0 _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
