I've got a problem installing R 3.1.3 from source on Mac OSX 10.9.5 with
gcc-4.9-bin.tar.gz
./configure ends with:
R is now configured for x86_64-apple-darwin13.4.0
Source directory: .
Installation directory: /Library/Frameworks
C compiler: gcc -g -O2
Fortran 77 compiler: gfortran -g -O2
C++ compiler: g++ -g -O2
C++ 11 compiler: g++ -std=c++11 -g -O2
Fortran 90/95 compiler: gfortran -g -O2
Obj-C compiler: gcc -g -O2 -fobjc-exceptions
Interfaces supported: X11, aqua, tcltk
External libraries: readline
Additional capabilities: NLS, ICU
Options enabled: framework, shared BLAS, R profiling
Capabilities skipped: PNG, JPEG, TIFF, cairo
Options not enabled: memory profiling
Recommended packages: yes
... although also there is a warning during configure
configure: WARNING: X11/Intrinsic.h: accepted by the compiler, rejected by the
preprocessor!
configure: WARNING: X11/Intrinsic.h: proceeding with the compiler's result
'make' generates a lot of time-zone warnings, and ends in Done.
'make check' ends with time-zone related errors.
< Warning messages:
< 1: In strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
< unknown timezone 'Europe/London'
< 2: In strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
< unknown timezone 'GMT'
< 3: In strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
< unknown timezone 'America/New_York'
make[3]: *** [simple-true.Rout] Error 1
make[2]: *** [test-Specific] Error 2
make[1]: *** [test-all-basics] Error 1
make: *** [check] Error 2
'make install' returns
make[1]: Nothing to be done for `install'.
make[1]: Nothing to be done for `install'.
installing doc ...
installing doc/html ...
installing doc/manual ...
installing etc ...
installing share ...
chmod: Unable to change file mode on
/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R: Operation not
permitted
make[2]: *** [install] Error 1
make[1]: *** [install] Error 1
make: *** [install] Error 1
I've tried ./configure --without-internal-tzcode ...and it doesn't make much
difference.
I've checked my /usr/share/zoneinfo/ all looks normal I guess.
I'm thinking the problem might be related to gfortran, Xcode (updated
recently), or permissions. The time-zone issue might be a result rather than a
cause. Any advice would be greatly appreciated.
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