On 27/06/2013 14:32, Thomas wrote:
I've been given an old Mac to run some R programs on and I'm having
trouble setting up. I just need to get igraph working It's OS X 10.5.6
and I have installed R 2.15.3 plus the copy of XCode that came on the
DVD.
For some reason I can't use the package installer. The list of available
packages appears but I can't install any of them - the full error
message I get is copied below.
So then I copied the igraph tar.gz file to my machine and in Terminal
ran R CMD INSTALL /Users...igraph_0.6.5-2.tar.gz. I get an error
message saying:
make: gfortran: command not found
Well, you did not install it. See the 'R Installation and
Administration Manual' in that version of R.
Hint: see http://cran.r-project.org/bin/macosx/tools/ and you probably
want the tcltk pkg too.
Error 127
compilation failed for package
Any advise would be appreciated.
Thank you!
Thomas Chesney
===================
Warning: dependency ‘graph’ is not available
Note that is a Bioconductor package.
also installing the dependencies ‘rgl’, ‘ape’, ‘XML’, ‘jpeg’, ‘png’
trying URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/rgl_0.93.932.tgz'
Content type 'application/x-gzip' length 7832250 bytes (7.5 Mb)
opened URL
======
downloaded 924 Kb
You or that CRAN mirror has a networking problem. Try a different mirror.
trying URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/ape_3.0-8.tgz'
Content type 'application/x-gzip' length 1466843 bytes (1.4 Mb)
opened URL
==
downloaded 79 Kb
trying URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/XML_3.96-1.1.tgz'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/XML_3.96-1.1.tgz'
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 947051 != reported length 7832250
2: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 81060 != reported length 1466843
3: In download.file(url, destfile, method, mode = "wb", ...) :
unable to connect to 'star-www.st-andrews.ac.uk' on port 80.
Warning in download.packages(pkgs, destdir = tmpd, available =
available, :
download of package ‘XML’ failed
trying URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/jpeg_0.1-2.tgz'
Content type 'application/x-gzip' length 896337 bytes (875 Kb)
opened URL
===
downloaded 67 Kb
trying URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/png_0.1-4.tgz'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/png_0.1-4.tgz'
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 69513 != reported length 896337
2: In download.file(url, destfile, method, mode = "wb", ...) :
unable to connect to 'star-www.st-andrews.ac.uk' on port 80.
Warning in download.packages(pkgs, destdir = tmpd, available =
available, :
download of package ‘png’ failed
trying URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/igraph_0.6.5-1.tgz'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL
'http://star-www.st-andrews.ac.uk/cran/bin/macosx/leopard/contrib/2.15/igraph_0.6.5-1.tgz'
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
unable to connect to 'star-www.st-andrews.ac.uk' on port 80.
Warning in download.packages(pkgs, destdir = tmpd, available =
available, :
download of package ‘igraph’ failed
gzip: stdin: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now
Error: file
‘/var/folders/2A/2AFkl9EaGiqnzvUcx24gXU+++TI/-Tmp-//RtmpNmBaq8/downloaded_packages/rgl_0.93.932.tgz’
is not an OS X binary package
In addition: Warning message:
'tar' returned non-zero exit code 2 This message and any attachment are
intended solely for the addressee and may contain confidential
information. If you have received this message in error, please send it
back to me, and immediately delete it. Please do not use, copy or
disclose the information contained in this message or in any
attachment. Any views or opinions expressed by the author of this email
do not necessarily reflect the views of the University of Nottingham.
This message has been checked for viruses but the contents of an attachment
may still contain software viruses which could damage your computer
system, you are advised to perform your own checks. Email communications
with the University of Nottingham may be monitored as permitted by UK
legislation.
_______________________________________________
R-SIG-Mac mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
--
Brian D. Ripley, [email protected]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
_______________________________________________
R-SIG-Mac mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
