It happened to me that when I clicked on the "install dependencies"
checkbox, it basically installed every possible package. I remember it
happened with doBy, where it installed tens of packages. The problem is
likely because it installs the dependencies of the dependencies of the
dependencies and so on. It might be fixed by now. But this has never
happened with install.packages() so I don't try to use the package
installer anymore.
Ivan
--
Ivan CALANDRA
Université de Bourgogne
UMR CNRS/uB 6282 Biogéosciences
6 Boulevard Gabriel
21000 Dijon, FRANCE
+33(0)3.80.39.63.06
ivan.calan...@u-bourgogne.fr
http://biogeosciences.u-bourgogne.fr/calandra
Le 23/01/13 12:18, Federico Calboli a écrit :
On 23 Jan 2013, at 11:07, Ivan Calandra <ivan.calan...@u-bourgogne.fr> wrote:
Hi again,
It probably won't be of any help for now, but you might need it in the future:
I used to install packages from the package installer. Then I realized that it
often messed up with dependencies.
I notice there is a nice 'install dependencies' checkbox on the GUI package
installer. It has always worked for me.
BW
F
That's why the best way to install packages and their dependencies on Mac is to run
install.packages("package") in the console.
I hope you'll be able to fix your problem soon
Ivan
--
Ivan CALANDRA
Université de Bourgogne
UMR CNRS/uB 6282 Biogéosciences
6 Boulevard Gabriel
21000 Dijon, FRANCE
+33(0)3.80.39.63.06
ivan.calan...@u-bourgogne.fr
http://biogeosciences.u-bourgogne.fr/calandra
Le 23/01/13 11:59, Ross Tinsley a écrit :
Hi Ivan
In R I was going to the Packages and Data menu then clicking on Packages
Installer option. From there I selected CRAN sources and used that to search
for the below libraries (I also ticked the option to install dependencies).
Some such as Amelia did install but others one didn't. Prof Brian has given
some suggestions so I will follow up on those first, as I think my overall
install is not correct just yet.
Will get back to you all on how I get on.
Thanks
Ross
*
Dr Ross Tinsley*
Head of Research | Editor IHTSJ
International Hospitality and Tourism Research Centre
*HTMi* | Hotel and Tourism Management Institute | Switzerland
On 23 Jan 2013, at 11:43, Ivan Calandra <ivan.calan...@u-bourgogne.fr
<mailto:ivan.calan...@u-bourgogne.fr>> wrote:
Hi!
Not sure it will help you, but in the R.app, have you run install.packages("name of
package") first? What is the error when you type library(name of package)?
HTH,
Ivan
--
Ivan CALANDRA
Université de Bourgogne
UMR CNRS/uB 6282 Biogéosciences
6 Boulevard Gabriel
21000 Dijon, FRANCE
+33(0)3.80.39.63.06
ivan.calan...@u-bourgogne.fr <mailto:ivan.calan...@u-bourgogne.fr>
http://biogeosciences.u-bourgogne.fr/calandra
Le 23/01/13 11:27, Ross Tinsley a écrit :
Originally posted this on the standard mailing list and it was suggested that I
post here on SIG Mac list. Have also included Beren's response who emphasised
using the R.app GUI, however I am doing this as my first step. The below error
message turns up there as well. Am stuck on the 'make' command and how to make
that work.
Here are the commands in R I am trying to run.
library(Amelia)
library(Hmisc)
library(polycor)
library(psych)
library(qgraph)
library(lavaan)
library(semTools)
library(paran)
library(nFactors)
library(GPArotation)
library(sem)
library(polycor)
library(rrcov)
Thanks for any help.
Hello all
I am a researcher in the field of tourism and have just recently installed R64
and RStudio onto my Mac (running latest OS). I am ran into some problems
installing additional packages. I have looked through the General FAQs and Mac
FAQS but haven't been able to find a solution.
I have downloaded the various packages I need from CRAN sources and while some
have successfully installed others have not. I have been following the
instructions on the Mac FAQ to unzip and install the downloaded packages using
the command line but the results seem to indicate an error (they are installed
but then don't work properly and so are subsequently uninstalled). It happens
on more than one so that's why I thought it might be something generic I am
doing. Here is a copy of the command line results:
Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
/private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/Hmisc_3.10-1.tar.gz
* installing to library
‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
* installing *source* package ‘Hmisc’ ...
** package ‘Hmisc’ successfully unpacked and MD5 sums checked
** libs
*** arch - i386
sh: make: command not found
ERROR: compilation failed for package ‘Hmisc’
* removing
‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Hmisc’
Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
/private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/acepack_1.3-3.2.tar.gz
* installing to library
‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
* installing *source* package ‘acepack’ ...
** package ‘acepack’ successfully unpacked and MD5 sums checked
** libs
*** arch - i386
sh: make: command not found
ERROR: compilation failed for package ‘acepack’
* removing
‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/acepack’
Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
/private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/arm_1.6-01.02.tar.gz
* installing to library
‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
ERROR: dependency ‘lme4’ is not available for package ‘arm’
* removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/arm’
Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
/private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/chron_2.3-43.tar.gz
* installing to library
‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
* installing *source* package ‘chron’ ...
** package ‘chron’ successfully unpacked and MD5 sums checked
** libs
*** arch - i386
sh: make: command not found
ERROR: compilation failed for package ‘chron’
* removing
‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/chron’
Berend's response:
1. This belongs on the R-SIG-Mac mailing list
2. Why don't you use the R.app GUI to install the binary versions of the
required packages? Much easier.
3. The message: "sh: make: command not found" means that you don't have make
installed.
Most likely you don't have other required tools installed.
If you use the R.app GUI you don't really need tall those tools.
Advice: use R.app to install and if needed get the Xcode tools but only if you
intend to compile your own packages.
Berend
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--
Federico C. F. Calboli
Neuroepidemiology and Ageing Research
Imperial College, St. Mary's Campus
Norfolk Place, London W2 1PG
Tel +44 (0)20 75941602 Fax +44 (0)20 75943193
f.calboli [.a.t] imperial.ac.uk
f.calboli [.a.t] gmail.com
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