Simon is pretty much off-line, which is why I replied.
I would simply set the R->R64 symlink as the installer would have done
in SL and Lion. The things will work as you expected.
Because I have so many flavours of R installed, I make my own links (in
~/bin, which is on my path).
On 13/11/2012 20:58, Marc Schwartz wrote:
On Nov 13, 2012, at 2:30 PM, Berend Hasselman <b...@xs4all.nl> wrote:
On 13-11-2012, at 21:07, Federico Calboli <f.calb...@imperial.ac.uk> wrote:
On 13 Nov 2012, at 19:59, Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote:
Marc,
Start with 'which R', or run /usr/bin/R explicitly.
$ which R
/usr/bin/R
That should be a symlink to
/Library/Frameworks/R.framework/Resources/bin/R
it does:
$ ls -l /usr/bin/R
lrwxr-xr-x 1 root wheel 47 28 Oct 10:47 /usr/bin/R@ ->
/Library/Frameworks/R.framework/Resources/bin/R
and that should be a symlink,
it's not:
$ ls -l /Library/Frameworks/R.framework/Resources/bin/R
-rwxrwxr-x 1 root admin 8775 26 Oct 17:22
/Library/Frameworks/R.framework/Resources/bin/R*
$ ls /Library/Frameworks/R.framework/Resources/bin/R*
/Library/Frameworks/R.framework/Resources/bin/R*
/Library/Frameworks/R.framework/Resources/bin/Rd2pdf*
/Library/Frameworks/R.framework/Resources/bin/R32*
/Library/Frameworks/R.framework/Resources/bin/Rdconv*
/Library/Frameworks/R.framework/Resources/bin/R64*
/Library/Frameworks/R.framework/Resources/bin/Rdiff*
/Library/Frameworks/R.framework/Resources/bin/REMOVE*
/Library/Frameworks/R.framework/Resources/bin/Rprof*
/Library/Frameworks/R.framework/Resources/bin/Rcmd*
/Library/Frameworks/R.framework/Resources/bin/Rscript*
BW
F
The postflight script tests for 10.6 and 10.7 but not for 10.8.
The relevant lines are
# some jobs needed specifically on Mac OS X 10.6 (Snow Leopard) and 10.7 (Lion)
if uname -r | grep ^1[01] >/dev/null; then
On 10.8.2 uname -r returns 12.2.0 and that doesn't match the grep test.
It would seem that the test should be grep ^1[012] or grep ^1[0-2] .
Actually, I think it needs to be future-proofed.
Berend
I was just getting around to that section of the script.
I suspect that this is correct and the timing would make sense with my
observations here.
Mountain Lion was released on July 25 and I updated shortly thereafter.
The R 2.15.1 OSX binary is dated June 22, before ML was available, so I would
have had that installed under Lion, since I would have updated from 2.15.0 soon
after the R OSX binary became available. Thus, 64 bit R would have been the
default at that time.
R 2.15.2 was of course released after ML, so that is when the change occurred
to 32 bit R.
Under ML as Berend notes above:
~ uname -r
12.2.0
~ uname -r | grep ^1[012]
12.2.0
I had sent an initial e-mail to Simon with the information, but he replied from
his iPhone that he is away for a couple of weeks sans computer.
In the mean time, I will get in the habit of using 'R64' from the CLI and in
ESS.
If there is anything else that is needed, let me know.
Thanks all!
Regards,
Marc
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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