On 12/07/2012 9:36 AM, peter dalgaard wrote:
(Why do we get an identical post 2 weeks later??)
I see slightly different trouble:
> library(rgl)
Error : .onLoad failed in loadNamespace() for 'rgl', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl/libs/x86_64/aglrgl.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl/libs/x86_64/aglrgl.so,
6): Symbol not found: __ZN3gui13OSXGUIFactory12hasEventLoopEv
Referenced from:
/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl/libs/x86_64/aglrgl.so
Expected in: dynamic lookup
Error: package/namespace load failed for ‘rgl’
-------------
The odd thing is, it happens only in R.app 64 bit, not in 32 bit and not in R64
in Terminal.app. Same pattern was present in 2.15.0.
The workaround for the problem you're seeing is just to delete the
aglrgl.so library. It doesn't work on the latest OSX release in 64
bits. (I suspect that's caused by rgl using an API that Apple no longer
offers, but I don't know a fix.) The command line version uses the X11
driver, and R.app 64 bit will fall back to that if aglrgl.so is not found.
I don't know what's causing Michael's problem and doubt if the same
workaround would help, but it probably wouldn't hurt.
Duncan Murdoch
On Jun 29, 2012, at 18:39 , Michael Kubovy wrote:
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] datasets splines utils stats graphics grDevices methods base
>
> other attached packages:
> [1] DiceEval_1.1 DiceKriging_1.3.3 BiocInstaller_1.4.7 ctv_0.7-4
sos_1.3-4 brew_1.0-6 Hmisc_3.9-3 survival_2.36-14
> [9] MASS_7.3-19
>
> loaded via a namespace (and not attached):
> [1] cluster_1.14.2 grid_2.15.1 lattice_0.20-6 tools_2.15.1
> ############## FROM BINARY #############
>> install.packages('rgl')
> trying URL
'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.15/rgl_0.92.880.tgz'
> Content type 'application/x-gzip' length 10757858 bytes (10.3 Mb)
> opened URL
> ==================================================
> downloaded 10.3 Mb
>
>
> The downloaded binary packages are in
>
/var/folders/gm/j372x16n747504v9j8nvwryr0000gn/T//RtmpxtW0O1/downloaded_packages
>> library(rgl)
> Error in get(Info[i, 1], envir = env) :
> internal error -3 in R_decompress1
> Error: package/namespace load failed for Œrgl‚
> ############## FROM SOURCE #############
>> install.packages('rgl', type = 'source' )
> trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/rgl_0.92.880.tar.gz'
> Content type 'application/x-gzip' length 1742168 bytes (1.7 Mb)
> opened URL
> ==================================================
> downloaded 1.7 Mb
> ######### ... ##############
> * installing *source* package Œrgl‚ ...
> ** package Œrgl‚ successfully unpacked and MD5 sums checked
> checking for gcc... gcc -arch x86_64 -std=gnu99
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables... checking whether we are cross
compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none
needed
> checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... (cached)
none needed
> checking for libpng-config... yes
> configure: using libpng-config
> configure: using libpng dynamic linkage
> checking for X... libraries /usr/X11/lib, headers
> checking for glEnd in -lGL... yes
> checking for gluProject in -lGLU... yes
> checking for freetype-config... yes
> configure: using Freetype and FTGL
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> *** arch - x86_64
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c ABCLineSet.cpp -o
ABCLineSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Background.cpp -o
Background.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Color.cpp -o Color.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Disposable.cpp -o
Disposable.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Light.cpp -o Light.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c LineSet.cpp -o LineSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c LineStripSet.cpp -o
LineStripSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Material.cpp -o Material.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c PlaneSet.cpp -o PlaneSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c PointSet.cpp -o PointSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c PrimitiveSet.cpp -o
PrimitiveSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c QuadSet.cpp -o QuadSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c RenderContext.cpp -o
RenderContext.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Shape.cpp -o Shape.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c SphereMesh.cpp -o
SphereMesh.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c SphereSet.cpp -o SphereSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c SpriteSet.cpp -o SpriteSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c String.cpp -o String.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Surface.cpp -o Surface.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c TextSet.cpp -o TextSet.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Texture.cpp -o Texture.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c Viewpoint.cpp -o Viewpoint.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c api.cpp -o api.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c assert.cpp -o assert.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c callbacks.cpp -o callbacks.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c device.cpp -o device.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c devicemanager.cpp -o
devicemanager.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c fps.cpp -o fps.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c ftgl.cpp -o ftgl.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c geom.cpp -o geom.o
> gcc -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -fPIC -g -O2 -c gl2ps.c -o gl2ps.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c glErrors.cpp -o glErrors.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c glgui.cpp -o glgui.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c gui.cpp -o gui.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c init.cpp -o init.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c par3d.cpp -o par3d.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c pixmap.cpp -o pixmap.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c render.cpp -o render.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c rglmath.cpp -o rglmath.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c rglview.cpp -o rglview.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c scene.cpp -o scene.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c select.cpp -o select.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c win32gui.cpp -o win32gui.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c win32lib.cpp -o win32lib.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c x11gui.cpp -o x11gui.o
> x11gui.cpp: In constructor Œgui::X11GUIFactory::X11GUIFactory(const char*)‚:
> x11gui.cpp:468: warning: deprecated conversion from string constant to Œchar*‚
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include
-DHAVE_FREETYPE -Iext/ftgl -I/usr/local/include/freetype2 -I/usr/local/include
-Iext -I/usr/local/include -g -O2 -fPIC -g -O2 -c x11lib.cpp -o x11lib.o
> g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
rgl.so ABCLineSet.o BBoxDeco.o Background.o Color.o Disposable.o Light.o LineSet.o
LineStripSet.o Material.o PlaneSet.o PointSet.o PrimitiveSet.o QuadSet.o
RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o
TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o
devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o
par3d.o pixmap.o render.o rglmath.o rglview.o scene.o select.o win32gui.o
win32lib.o x11gui.o x11lib.o -lGLU -lGL -framework OpenGL -dylib_file
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
-L/usr/local/lib -lpng14 -L/usr/X11/lib -lX11 -L/usr/local/lib -lfreetype -lz
-lbz2 -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
> mkdir Temp
> mv x11*.o Temp
> mkdir -p AGL
> mv AGL/* .
> MAKINGAGL=TRUE /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB -o
aglrgl.so *.cpp *.c \
> osx/*.mm osx/*.cpp
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DRGL_USE_COCOA -DHAVE_FREETYPE -Iext/ftgl
-I/usr/local/include/freetype2 -I/usr/local/include -Iext -I/usr/local/include
-g -O2 -fPIC -g -O2 -c x11gui.cpp -o x11gui.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DRGL_USE_COCOA -DHAVE_FREETYPE -Iext/ftgl
-I/usr/local/include/freetype2 -I/usr/local/include -Iext -I/usr/local/include
-g -O2 -fPIC -g -O2 -c x11lib.cpp -o x11lib.o
> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -DHAVE_PNG_H
-I/usr/local/include/libpng14 -DRGL_USE_COCOA -DHAVE_FREETYPE -Iext/ftgl
-I/usr/local/include/freetype2 -I/usr/local/include -Iext -I/usr/local/include
-g -O2 -fPIC -g -O2 -c osx/osxlib.cpp -o osx/osxlib.o
> g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
aglrgl.so ABCLineSet.o BBoxDeco.o Background.o Color.o Disposable.o Light.o
LineSet.o LineStripSet.o Material.o PlaneSet.o PointSet.o PrimitiveSet.o QuadSet.o
RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o
TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o
devicemanager.o fps.o ftgl.o geom.o glErrors.o glgui.o gui.o init.o par3d.o
pixmap.o render.o rglmath.o rglview.o scene.o select.o win32gui.o win32lib.o
x11gui.o x11lib.o gl2ps.o osx/osxgui.o osx/osxlib.o -L/usr/local/lib -lpng14
-framework Cocoa -L/usr/local/lib -lfreetype -lz -lbz2 -lobjc
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
> ld: warning: ignoring file osx/osxgui.o, file was built for i386 which is not
the architecture being linked (x86_64)
> mv x11*.o AGL
> mv Temp/* .
> rm -rf Temp
> installing to
/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl/libs/x86_64
> ** R
> ** demo
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** testing if installed package can be loaded
> ######### ... ##############
> * DONE (rgl)
>
> The downloaded source packages are in
>
Œ/private/var/folders/gm/j372x16n747504v9j8nvwryr0000gn/T/RtmpxtW0O1/downloaded_packages‚
>> library(rgl)
> Error in get(Info[i, 1], envir = env) :
> internal error -3 in R_decompress1
> Error: package/namespace load failed for Œrgl‚
>
>
> ______________________________________________
> Professor Michael Kubovy
> University of Virginia
> Department of Psychology
> for mail add: for FedEx or UPS
add:
> P.O.Box 400400 Gilmer Hall, Room 102
> Charlottesville, VA 22904-4400 485 McCormick Road
> USA Charlottesville,
VA 22903
> room phone
> Office: B011 +1-434-982-4729
> Lab: B019 +1-434-982-4751
> WWW: http://www.people.virginia.edu/~mk9y/
>
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
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