I should add, it is the same version of gfortran that R is expecting, just installed in a different location
On Tue, Jan 17, 2012 at 1:25 AM, BEES INC <bees....@gmail.com> wrote: > I do not believe gfortran comes with OS X, so I installed the latest > version. R was picking up a version that had been installed with > octave, which is why I needed to make some changes as I did not want > to link R libs with something packaged with octave (because if i > update or remove octave all my R libs will break). > > I don't think that is a material part of the issue, and doing some > digging I see it is not just my machine: > > http://cran.r-project.org/web/checks/check_results_LogicReg.html > http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html > > Which shows the same error. Can you build the package OK? > > Thanks > > On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen > <kasperdanielhan...@gmail.com> wrote: >> On Mon, Jan 16, 2012 at 2:57 AM, BEES INC <bees....@gmail.com> wrote: >>> Hey there >>> >>> I am having a bit of trouble getting this working, I had to do a bit >>> of fiddling with makefiles to get it to find the right gfortran, but >>> it builds & links without error, however the install gives the >>> following error: >> >> You have used some special (?) gfortran at compile time (based on the >> above, but I am not sure). This may not work with R that has been >> compiled with another gfortran and it might also not work at run time. >> >> We really need more information about exactly what you have done. >> >> Kasper >> >> >>> >>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>> unable to load shared object >>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so': >>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so, >>> 6): no suitable image found. Did find: >>> >>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so: >>> out of address space >>> >>> Full install is as follows: >>> >>> $ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz >>> * installing to library >>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’ >>> * installing *source* package ‘LogicReg’ ... >>> ** package ‘LogicReg’ successfully unpacked and MD5 sums checked >>> ** Creating default NAMESPACE file >>> ** libs >>> *** arch - i386 >>> gfortran -fPIC -g -O2 -c My_own_scoring.f -o My_own_scoring.o >>> gfortran -fPIC -g -O2 -c external.f -o external.o >>> gfortran -fPIC -g -O2 -c slogic.f -o slogic.o >>> gcc-4.2 -arch i386 -std=gnu99 >>> -I/Library/Frameworks/R.framework/Resources/include >>> -I/Library/Frameworks/R.framework/Resources/include/i386 >>> -I/usr/local/include -fPIC -g -O2 -c swrite.c -o swrite.o >>> gcc-4.2 -arch i386 -std=gnu99 -dynamiclib >>> -Wl,-headerpad_max_install_names -single_module -multiply_defined >>> suppress -L/usr/local/lib >>> -L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so >>> My_own_scoring.o external.o slogic.o swrite.o -lgfortran >>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework >>> -Wl,CoreFoundation >>> installing to >>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386 >>> ** R >>> ** data >>> ** inst >>> ** preparing package for lazy loading >>> ** help >>> *** installing help indices >>> ** building package indices ... >>> ** testing if installed package can be loaded >>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>> unable to load shared object >>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so': >>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so, >>> 6): no suitable image found. Did find: >>> >>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so: >>> out of address space >>> Error: loading failed >>> Execution halted >>> ERROR: loading failed >>> * removing >>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’ >>> $ >>> >>> Any ideas? >>> >>> Thanks >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
