Marc, the source code of those slides is in https://github.com/jarioksa/ordination101/. Look at the source code to see how the slide was generated.
cheers, Jari Oksanen On 7 Dec 2018, at 09:34, Marc Taylor <marchtay...@gmail.com<mailto:marchtay...@gmail.com>> wrote: Thanks Franz! cheers, Marc On Fri, Dec 7, 2018 at 7:44 AM Franz Krah <f.k...@mailbox.org<mailto:f.k...@mailbox.org>> wrote: Hi Marc, This is the example in the function envfit: library(vegan) data(varespec, varechem) library(MASS) ord <- metaMDS(varespec) (fit <- envfit(ord, varechem, perm = 999)) scores(fit, "vectors") plot(ord) plot(fit) Cheers, Franz ----------------------------------------------------- Franz-S. Krah (PhD student) Ecology and Evolution of mushroom-forming fungi RG Biodiversity of Plants Technical University of Munich (TUM) Mobile: 0170 5221189 Website: mycolab.de<http://mycolab.de> Mail: franz.k...@tum.de<mailto:franz.k...@tum.de> —————————————————————————— On 7. Dec 2018, at 07:30, Marc Taylor <marchtay...@gmail.com<mailto:marchtay...@gmail.com>> wrote: Hi all, a quick question: Does anyone know what vegan function was called to produce the following permutation test in this slide of Jari's: http://cc.oulu.fi/~jarioksa/opetus/metodi/ordination101.html#44 Cheers, Marc [[alternative HTML version deleted]] _______________________________________________ R-sig-ecology mailing list R-sig-ecology@r-project.org<mailto:R-sig-ecology@r-project.org> https://stat.ethz.ch/mailman/listinfo/r-sig-ecology [[alternative HTML version deleted]] _______________________________________________ R-sig-ecology mailing list R-sig-ecology@r-project.org<mailto:R-sig-ecology@r-project.org> https://stat.ethz.ch/mailman/listinfo/r-sig-ecology [[alternative HTML version deleted]] _______________________________________________ R-sig-ecology mailing list R-sig-ecology@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-ecology
